Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c10f
         (554 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6X709 Cluster: Putative uncharacterized protein; n=1; ...    34   1.9  
UniRef50_Q23C36 Cluster: Putative uncharacterized protein; n=1; ...    34   1.9  
UniRef50_O97299 Cluster: Putative uncharacterized protein MAL3P7...    33   3.4  
UniRef50_Q8E2E2 Cluster: Membrane protein, putative; n=5; Strept...    33   5.9  

>UniRef50_A6X709 Cluster: Putative uncharacterized protein; n=1;
           Ochrobactrum anthropi ATCC 49188|Rep: Putative
           uncharacterized protein - Ochrobactrum anthropi (strain
           ATCC 49188 / DSM 6882 / NCTC 12168)
          Length = 370

 Score = 34.3 bits (75), Expect = 1.9
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +1

Query: 16  KSSRAGVLDHQSTLKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQLRIYVSRLRRLS 195
           K S A  L   +      +V +T   +RR RC +G       ++R  +  I V+   R++
Sbjct: 20  KKSSAVPLLQNNAAHGLVHVSDTAPGIRRLRCGAG-----FRYVRFDKKAISVADRNRIA 74

Query: 196 RIQSPGLWIVRWLCC 240
           ++  P  W   W+CC
Sbjct: 75  KLAIPPAWNDVWICC 89


>UniRef50_Q23C36 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1524

 Score = 34.3 bits (75), Expect = 1.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 42  SSVNFENCSKCSRNCSFCS 98
           S++N++ C KCS NC FC+
Sbjct: 812 SNLNYQTCEKCSENCKFCT 830


>UniRef50_O97299 Cluster: Putative uncharacterized protein MAL3P7.37;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL3P7.37 - Plasmodium falciparum
            (isolate 3D7)
          Length = 1542

 Score = 33.5 bits (73), Expect = 3.4
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 309  FNKNILKNIMILLFISFEILINNFRGLLSIYKTPLFLSVFFSHVNYHFV 455
            FN N  K+  I L+  + IL NN     +I K  L +  FF +V Y F+
Sbjct: 1286 FNNNCCKDNNIYLYYPYSILCNNLDLNNNILKKHLLVEHFFKYVLYDFI 1334


>UniRef50_Q8E2E2 Cluster: Membrane protein, putative; n=5;
           Streptococcus agalactiae|Rep: Membrane protein, putative
           - Streptococcus agalactiae serotype V
          Length = 463

 Score = 32.7 bits (71), Expect = 5.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 321 ILKNIMILLFISFEILINNFRGLLSIYKTP-LFLSVFFS 434
           +LK ++I        LI N +  LSI +TP LF+S+FF+
Sbjct: 249 LLKKLVIYFIFFIATLIGNLKNELSILETPLLFISIFFT 287


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 423,795,209
Number of Sequences: 1657284
Number of extensions: 7356428
Number of successful extensions: 24610
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24587
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36655321736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)