Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c09f
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80848-1|AAB37990.3| 389|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z66561-1|CAA91454.1| 635|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z70682-6|CAH60781.2| 401|Caenorhabditis elegans Hypothetical pr... 29 2.0
AC084160-2|AAK39373.1| 376|Caenorhabditis elegans Hypothetical ... 29 2.0
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 29 3.5
AC024743-1|AAK68402.2| 177|Caenorhabditis elegans Hypothetical ... 28 4.6
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 28 6.1
Z74030-16|CAI79165.1| 481|Caenorhabditis elegans Hypothetical p... 28 6.1
Z74030-15|CAI79164.1| 477|Caenorhabditis elegans Hypothetical p... 28 6.1
Z74030-7|CAA98447.2| 559|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z74030-6|CAA98444.2| 508|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 28 6.1
AB291062-1|BAF73936.1| 157|Caenorhabditis elegans dihydrofolate... 28 6.1
Z70210-1|CAA94149.1| 176|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF440520-1|AAL34108.1| 172|Caenorhabditis elegans SKR-21 protein. 27 8.1
>U80848-1|AAB37990.3| 389|Caenorhabditis elegans Hypothetical
protein T10H10.3 protein.
Length = 389
Score = 30.7 bits (66), Expect = 0.87
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 81 LYANETSVSDSKLEDDLYNSILVADYDHSVEK--SKQIYE-DKKSEVITNVVNKLIRNNK 251
+YA S D LE DL+N + +Y+H + K +++++ KK E NV+N+ I
Sbjct: 318 MYAQSDSSLDHLLEWDLFNFEQLTEYEHLMMKLYKQEVFDIVKKYEKKRNVLNREIHRRD 377
Query: 252 MN 257
++
Sbjct: 378 VS 379
>Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical
protein F33E2.7 protein.
Length = 174
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = +1
Query: 43 KPFKLFCVFSW------RLCMPTKPQ-SPTPNSKTIFTTASSLPITTIPLKRANRSTRTR 201
KP+ + C F+ +C P+KP+ S T + T TT ++ P TT +T T
Sbjct: 59 KPYNIDCPFAIPPITFNAVCDPSKPKPSTTTTTTTTPTTTTTTPTTTTTTPTTTTTTPT- 117
Query: 202 RAKSSQMS*TNSYETTR*TAWSTP 273
++ + T + TT T STP
Sbjct: 118 -TTTTTPTTTTTTPTTTTTTRSTP 140
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 91 TKPQSPTPNSKTIF--TTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAW 264
T +PT ++T TT ++ P TT P +T T AK+++ + T + +TT+ T+
Sbjct: 254 TTTTTPTTTTQTTTKPTTTTTTPTTT-PTTTTTPTTTTTTAKTTKST-TTTTKTTKTTST 311
Query: 265 STPTSYGSKAP 297
T T+ K P
Sbjct: 312 PTTTTTTPKTP 322
>Z66561-1|CAA91454.1| 635|Caenorhabditis elegans Hypothetical
protein F08G12.1 protein.
Length = 635
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 72 VASLYANETSVSDSKLEDDLYNSILVADYDHSVE---KSKQIYEDKKSEV 212
+ L N++ + S E D Y ADYD +E + ++ Y DKKSE+
Sbjct: 250 IRQLETNKSEIVSSYHELDCYQETPEADYDTFIELVNQKRREYADKKSEM 299
>Z70682-6|CAH60781.2| 401|Caenorhabditis elegans Hypothetical
protein F08G5.7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 52 KLFCVFSWRLCMPTKPQSPTPN-SKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS* 228
++ C + R T +PT + TI T+ +++ TT+ +A +T+T + ++
Sbjct: 195 QIICKYCPRETTSTTTVTPTTTKAATIKTSTTTVTPTTVTTTKAPTTTKTSTSTTTPKFT 254
Query: 229 TNSYETTR*TAWSTPTSYGSKAP 297
T + +TT+ ++PTS + P
Sbjct: 255 TTTIQTTK-KITTSPTSTTASIP 276
>AC084160-2|AAK39373.1| 376|Caenorhabditis elegans Hypothetical
protein Y73B3B.1 protein.
Length = 376
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 93 ETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKS 206
+ ++SD K+ DL +SI DHS+ KS + EDK S
Sbjct: 276 DPAISDGKVVLDLIDSIKPNVIDHSLVKSGKSNEDKMS 313
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 186 IYEDKKS-EVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRECFPVEFRLIFAENNIK 362
+ +DK ++ V+++L N K+ C ++ QL IVR C+ + FA I+
Sbjct: 248 VCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQ 306
Query: 363 LMYKRDGL 386
+ K G+
Sbjct: 307 YVIKSSGI 314
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 186 IYEDKKS-EVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRECFPVEFRLIFAENNIK 362
+ +DK ++ V+++L N K+ C ++ QL IVR C+ + FA I+
Sbjct: 248 VCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQ 306
Query: 363 LMYKRDGL 386
+ K G+
Sbjct: 307 YVIKSSGI 314
>AC024743-1|AAK68402.2| 177|Caenorhabditis elegans Hypothetical
protein Y104H12BR.1 protein.
Length = 177
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 93 ETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKS 206
+ ++SD K+ DL ++I DHS+ KS + EDK S
Sbjct: 108 DPAISDGKVVLDLIDAIKPNVIDHSLVKSGKSNEDKMS 145
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 64 VFSWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLK 174
V + R +PT P+ P +T T AS L T +P+K
Sbjct: 647 VSTQRAPVPTTPRPTAPAVQTTTTRASRLETTRVPVK 683
>Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical
protein K02E2.8a protein.
Length = 188
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 82 CMPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRT 198
C+PT+ +P TT S P TT+P+ N + T
Sbjct: 14 CIPTQFVTPLNPGTITTTTTISAPTTTVPITTTNPVSTT 52
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 67 FSWRLC--MP--TKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TN 234
+ W+ C +P TKP + TP + TT +++P TT + ST T + + + T+
Sbjct: 246 YEWKKCGLVPETTKPTTTTPTT----TTTTTIPSTT----SSTTSTSTTTSVVTTTTVTS 297
Query: 235 SYETTR*TAWSTPTS 279
+ E T T+ STPT+
Sbjct: 298 TTEPT--TSTSTPTT 310
>Z74030-16|CAI79165.1| 481|Caenorhabditis elegans Hypothetical
protein D1054.9e protein.
Length = 481
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +1
Query: 85 MPTKPQSPTPNSKTIFTTASSLPITTIPLKR----ANRSTRTRRAKSSQMS*TNSYETTR 252
+PT+P + +S T +T LPI +R A+ ST T A+ S + T + TT
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTTE 294
Query: 253 *TAWSTPTS---YGSKAP 297
+T S G K P
Sbjct: 295 EPTTTTKGSEEQLGGKGP 312
>Z74030-15|CAI79164.1| 477|Caenorhabditis elegans Hypothetical
protein D1054.9d protein.
Length = 477
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +1
Query: 85 MPTKPQSPTPNSKTIFTTASSLPITTIPLKR----ANRSTRTRRAKSSQMS*TNSYETTR 252
+PT+P + +S T +T LPI +R A+ ST T A+ S + T + TT
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTTE 294
Query: 253 *TAWSTPTS---YGSKAP 297
+T S G K P
Sbjct: 295 EPTTTTKGSEEQLGGKGP 312
>Z74030-7|CAA98447.2| 559|Caenorhabditis elegans Hypothetical
protein D1054.9b protein.
Length = 559
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +1
Query: 85 MPTKPQSPTPNSKTIFTTASSLPITTIPLKR----ANRSTRTRRAKSSQMS*TNSYETTR 252
+PT+P + +S T +T LPI +R A+ ST T A+ S + T + TT
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTTE 294
Query: 253 *TAWSTPTS---YGSKAP 297
+T S G K P
Sbjct: 295 EPTTTTKGSEEQLGGKGP 312
>Z74030-6|CAA98444.2| 508|Caenorhabditis elegans Hypothetical
protein D1054.9a protein.
Length = 508
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +1
Query: 85 MPTKPQSPTPNSKTIFTTASSLPITTIPLKR----ANRSTRTRRAKSSQMS*TNSYETTR 252
+PT+P + +S T +T LPI +R A+ ST T A+ S + T + TT
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTTE 294
Query: 253 *TAWSTPTS---YGSKAP 297
+T S G K P
Sbjct: 295 EPTTTTKGSEEQLGGKGP 312
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 97 PQSPTPNSKTIFTTAS-SLPITTIPLKRANRSTRTR 201
PQ P P +T T +LP TT+P+ N++ RT+
Sbjct: 762 PQVPLPVVQTTQTAPKPTLPPTTLPVLTTNKTPRTK 797
>AB291062-1|BAF73936.1| 157|Caenorhabditis elegans dihydrofolate
reductase protein.
Length = 157
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 129 LYNSILV-ADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQG 293
+YNS++ AD H ++ D K ++ N + M+ + Y YQ+W +G
Sbjct: 102 IYNSLIEKADIIHLSTVHVEVEGDIKFPIMPENFNLVFEQFFMSNINYTYQIWKKG 157
>Z70210-1|CAA94149.1| 176|Caenorhabditis elegans Hypothetical
protein K08H2.1 protein.
Length = 176
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +3
Query: 192 EDKKSEVITNVVNKLIRNNK---MNCMEYAYQLWLQGSKDIVRECFPVEFRLIFAENNIK 362
+D ++T + IR N ++ E A++L + G D+ C V L N +K
Sbjct: 73 QDHAQRILTAWDVQFIRTNSAILLHLAEAAFRLEIVGLLDVA--CRAVSIMLGRTLNEVK 130
Query: 363 LMYKRDGLALTLDDENS 413
LM + G+ D+E+S
Sbjct: 131 LMLRVGGVESPSDEEDS 147
>AF440520-1|AAL34108.1| 172|Caenorhabditis elegans SKR-21 protein.
Length = 172
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +3
Query: 192 EDKKSEVITNVVNKLIRNNK---MNCMEYAYQLWLQGSKDIVRECFPVEFRLIFAENNIK 362
+D ++T + IR N ++ E A++L + G D+ C V L N +K
Sbjct: 69 QDHAQRILTAWDVQFIRTNSAILLHLAEAAFRLEIVGLLDVA--CRAVSIMLGRTLNEVK 126
Query: 363 LMYKRDGLALTLDDENS 413
LM + G+ D+E+S
Sbjct: 127 LMLRVGGVESPSDEEDS 143
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,961
Number of Sequences: 27780
Number of extensions: 227064
Number of successful extensions: 1110
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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