Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c08r
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   266   2e-72
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   266   3e-72
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   3.6  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   8.4  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  266 bits (653), Expect = 2e-72
 Identities = 132/220 (60%), Positives = 162/220 (73%), Gaps = 1/220 (0%)
 Frame = -1

Query: 729 GCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTN 550
           G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGVL  
Sbjct: 11  GTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLP 70

Query: 549 SRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVP 370
            RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP
Sbjct: 71  HRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVP 130

Query: 369 RRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVL 193
           +RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  L
Sbjct: 131 KRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTL 187

Query: 192 QXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQ 73
           Q                +   AE+A+L+A+R  E+K +R+
Sbjct: 188 QHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKRE 227


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  266 bits (651), Expect = 3e-72
 Identities = 132/220 (60%), Positives = 162/220 (73%), Gaps = 1/220 (0%)
 Frame = -1

Query: 729 GCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTN 550
           G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGVL  
Sbjct: 11  GTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLP 70

Query: 549 SRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVP 370
            RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP
Sbjct: 71  HRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVP 130

Query: 369 RRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVL 193
           +RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  L
Sbjct: 131 KRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTL 187

Query: 192 QXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQ 73
           Q                +   AE+A+L+A+R  E+K +++
Sbjct: 188 QHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKE 227


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = +1

Query: 193 QNYRGD*PLDLRCLMSGF----SIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT 360
           +N   D P  L C+ +      S+ FS  G   A       +I + K E +   GSTFG 
Sbjct: 57  ENENEDLPKQLCCMSTHTGTVTSVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFG- 115

Query: 361 *TAGYISISQSRNFLGTLAHNNKSQD 438
             +G       R++   L H+N  QD
Sbjct: 116 --SGEKHTENWRSYRRLLGHDNDIQD 139


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 2   FCGALWLELLESRIEADRLRLISSW 76
           F G++W E L S      L+LI SW
Sbjct: 247 FTGSIWYEFLCSASSVVALQLIRSW 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,714
Number of Sequences: 5004
Number of extensions: 57058
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)