Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c08f
(541 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 287 1e-76
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 285 6e-76
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 281 6e-75
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 220 2e-56
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 217 1e-55
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 215 7e-55
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 195 6e-49
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 192 3e-48
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 184 1e-45
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 169 5e-41
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 158 7e-38
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 137 1e-31
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 131 1e-29
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 123 3e-27
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 119 4e-26
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 80 4e-14
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 65 1e-09
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 64 2e-09
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 62 6e-09
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 62 6e-09
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 62 8e-09
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 60 3e-08
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 59 7e-08
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 59 7e-08
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 59 7e-08
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 59 7e-08
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 55 1e-06
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 55 1e-06
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 52 1e-05
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 50 5e-05
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 48 1e-04
UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 48 2e-04
UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 46 6e-04
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 45 0.001
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 44 0.002
UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyc... 42 0.007
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 41 0.021
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 40 0.048
UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.0
UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcin... 34 1.8
UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1; ... 33 3.2
UniRef50_O86476 Cluster: Clumping factor B precursor; n=31; Stap... 33 3.2
UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;... 33 4.2
UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa... 33 5.6
UniRef50_UPI0001552B57 Cluster: PREDICTED: hypothetical protein;... 32 7.3
UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;... 32 7.3
UniRef50_A1TZN4 Cluster: Flagellar hook-associated protein FlgK;... 32 7.3
UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4; Actin... 32 7.3
UniRef50_UPI00015564F7 Cluster: PREDICTED: similar to likely ort... 32 9.7
UniRef50_A6UN38 Cluster: Response regulator receiver protein; n=... 32 9.7
UniRef50_A0N0V6 Cluster: Putative regulatory protein; n=2; Azoar... 32 9.7
UniRef50_A6QZZ0 Cluster: Predicted protein; n=1; Ajellomyces cap... 32 9.7
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 287 bits (704), Expect = 1e-76
Identities = 131/165 (79%), Positives = 148/165 (89%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 227 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 406
FPMKQGVLTN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++V+KG ++
Sbjct: 61 FPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKD 120
Query: 407 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAK 541
IPGLTD V RRLGPKRAS IRKL+NL+KEDDVR+YVVKR LP K
Sbjct: 121 IPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEK 165
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 285 bits (698), Expect = 6e-76
Identities = 132/162 (81%), Positives = 147/162 (90%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 227 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 406
FPMKQGVLT+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120
Query: 407 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVL 532
IPGLTD VPRRLGPKRAS+IRKLFNLSKEDDVR+YVV++ L
Sbjct: 121 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL 162
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 281 bits (690), Expect = 6e-75
Identities = 125/165 (75%), Positives = 143/165 (86%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 227 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 406
FPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q+
Sbjct: 61 FPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQD 120
Query: 407 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAK 541
IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+YV++R LP K
Sbjct: 121 IPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEK 165
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 220 bits (537), Expect = 2e-56
Identities = 100/153 (65%), Positives = 120/153 (78%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
MK N+SYP TG QK E+ D+ K IF++KRMG VEAD LG+E+KGYVL++ GGNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 227 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 406
FPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA E
Sbjct: 61 FPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANE 120
Query: 407 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDV 505
I GLTD NVPRRLGPKR +K+R+LF K D V
Sbjct: 121 IAGLTDQNVPRRLGPKRLTKLRRLFGFKKADGV 153
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 217 bits (530), Expect = 1e-55
Identities = 102/162 (62%), Positives = 122/162 (75%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGNDKQG
Sbjct: 42 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQG 101
Query: 227 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 406
FPM QGVLTN+RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +V+KG E
Sbjct: 102 FPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNE 161
Query: 407 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVL 532
IPGLTD V ++LGPKRA+KIRKLFNL K DDVR+YV+ R +
Sbjct: 162 IPGLTDKAVGKKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI 203
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 215 bits (524), Expect = 7e-55
Identities = 100/163 (61%), Positives = 124/163 (76%), Gaps = 3/163 (1%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
MK N+SYP TG QK E+ D+ K IF +K+MG EVE D LGDE+KGYV ++AGGNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 227 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 406
FPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL IV+KG E
Sbjct: 61 FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAE 120
Query: 407 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD---VRRYVVKR 526
I GLT +PR+LGPKRA+ I+KLF L KEDD +++ V++R
Sbjct: 121 IDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRR 163
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 195 bits (475), Expect = 6e-49
Identities = 99/152 (65%), Positives = 115/152 (75%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG VEAD LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 227 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 406
FPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 61 FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS- 118
Query: 407 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD 502
P RLGP R+S I K++ L +EDD
Sbjct: 119 ---------PCRLGPVRSSNISKIYYLCEEDD 141
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 192 bits (469), Expect = 3e-48
Identities = 87/159 (54%), Positives = 121/159 (76%)
Frame = +2
Query: 50 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 229
K+NV+YPATG K F+ +E R F +KR+G EV+A LGDE+KGY+L++ GG DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 230 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 409
PM GV TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++SVL ++V+KG EI
Sbjct: 61 PMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEI 120
Query: 410 PGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 526
G+T+ +P R GP+RAS RKLFNLS++DDV+++V++R
Sbjct: 121 EGVTNDALPMRAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 184 bits (448), Expect = 1e-45
Identities = 85/167 (50%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
M++ ++YP G Q + ++ D L YEKR+G ++E ++LG ++KGY+ R+ GG DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 227 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 406
FPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+++KG +E
Sbjct: 61 FPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKE 120
Query: 407 IPGLTDGNVPRRLGPKRASKIRKLFNLS-KEDDVRRYVVKR-VLPAK 541
I GLT VPRR GPKRAS +R +F ++ + D + V+KR V P K
Sbjct: 121 IDGLTTTAVPRRFGPKRASTLRAMFGITDSKFDASKLVLKREVKPGK 167
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 169 bits (410), Expect = 5e-41
Identities = 83/163 (50%), Positives = 115/163 (70%), Gaps = 3/163 (1%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 223
MKLN++YP G K FE+ DE R+ + R+G EV+ G E+KGY+ R+ GG+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 224 GFPMKQGVLTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLALVIVRKG 397
GFPM GVL +SRV LL+ +G + R GER+RK+VRGC++ ++++++ + I + G
Sbjct: 61 GFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVG 120
Query: 398 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 526
Q I G+TD PRRLGPKRASKIRKLFNLS+ +DVR+YVV+R
Sbjct: 121 DQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRR 163
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 158 bits (384), Expect = 7e-38
Identities = 76/146 (52%), Positives = 99/146 (67%)
Frame = +2
Query: 50 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 229
K+N+S P TG K + D K + + RM +E + LG+E+ G R+ GGND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 230 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 409
PM QGVL + R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+V G + +
Sbjct: 68 PMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTL 127
Query: 410 PGLTDGNVPRRLGPKRASKIRKLFNL 487
PGLTD VP+RL PKRASKIR+LF L
Sbjct: 128 PGLTDVVVPKRLVPKRASKIRRLFGL 153
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 137 bits (332), Expect = 1e-31
Identities = 67/161 (41%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
MK N++ P+TG Q E+ DE KLRI Y K++ ++++ +G EW + + GG DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 227 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 400
FPMK+G+L+ SRV++L+ KG + R + GER RKSVRGCIV +SVL + ++
Sbjct: 61 FPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNIKLLTNKN 120
Query: 401 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 523
++ +T+ N + L KR+S +RK+ L+K DD+R++ +K
Sbjct: 121 DDLL-ITNKNSEKTLTHKRSSNLRKVLCLTKTDDIRKHYIK 160
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 131 bits (316), Expect = 1e-29
Identities = 65/103 (63%), Positives = 75/103 (72%)
Frame = +2
Query: 197 RVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLA 376
R GGNDKQG VL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLA
Sbjct: 62 RFTGGNDKQG------VLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLA 115
Query: 377 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDV 505
L +V+KGA EI GLTD NVPRRLGPKR +K+R+LF K D V
Sbjct: 116 LQVVKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKADRV 158
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 123 bits (296), Expect = 3e-27
Identities = 53/77 (68%), Positives = 64/77 (83%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 227 FPMKQGVLTNSRVRLLM 277
FPMKQ VLT+ R+ LL+
Sbjct: 61 FPMKQDVLTHDRIHLLL 77
Score = 60.1 bits (139), Expect = 3e-08
Identities = 27/42 (64%), Positives = 33/42 (78%)
Frame = +2
Query: 401 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 526
++IPGLTD PR +GPKRAS+IRKLFNLSKEDD + + R
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILR 121
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 119 bits (287), Expect = 4e-26
Identities = 59/137 (43%), Positives = 91/137 (66%)
Frame = +2
Query: 89 LFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVR 268
+FE+ +++R+ Y+K++G + + LG+E++G ++ + GG+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 269 LLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLG 448
L+SKG + YR RR G R+RKSVRG IV + VL L+I+R G +EI GLT+
Sbjct: 60 PLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHL 119
Query: 449 PKRASKIRKLFNLSKED 499
P++ K+RK+F + E+
Sbjct: 120 PRKEKKLRKMFGVPDEE 136
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 79.8 bits (188), Expect = 4e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWK 184
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 64.9 bits (151), Expect = 1e-09
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Frame = +2
Query: 41 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLG---DEWKGYV------ 193
A KL +S P G K E+ ++ +R+G E+ A +LG E G
Sbjct: 2 ATFKLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADAK 60
Query: 194 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVL 373
L++ GG DK GFPM+ V RV++L+S+G +RPR GER++K+V G + N+ +
Sbjct: 61 LKITGGTDKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQV 119
Query: 374 ALVIV 388
+ IV
Sbjct: 120 NMKIV 124
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 64.1 bits (149), Expect = 2e-09
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Frame = +2
Query: 41 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL--------GDEWKGYV- 193
A KL +S P +G K E+ ++ KR+G ++ A +L G E+ V
Sbjct: 2 ATFKLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDVK 60
Query: 194 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 343
L + GG DK GFPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 61 LEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 62.5 bits (145), Expect = 6e-09
Identities = 33/91 (36%), Positives = 55/91 (60%)
Frame = +2
Query: 137 RMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDG 316
++G E LG KGY LR+ GG+DK GFPMK+ V R + L++ G + ++P + G
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVN-GGTGFKPTKKG 86
Query: 317 ERKRKSVRGCIVDANLSVLALVIVRKGAQEI 409
R+RK+VRG + ++S + + + +G Q +
Sbjct: 87 LRRRKTVRGNTIADDISQINVKVSERGEQTL 117
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 62.5 bits (145), Expect = 6e-09
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Frame = +2
Query: 59 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFP 232
+S P TG QK+ E + ++L K++G +V + + D Y L++ GG D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIG-DVISGTIVDLPPDYELKITGGTDRDGFP 62
Query: 233 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 397
M+ + +R RLL+S G +RP+ G RKRK VRG ++ ++ + V+V+ G
Sbjct: 63 MRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 62.1 bits (144), Expect = 8e-09
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Frame = +2
Query: 86 KLFEV-VDEHKLRIFYEKRMGAEVEADQLGDEW-KGYVLRVAGGNDKQGFPMKQGVLTNS 259
K F++ ++ R F KR+G V A LG E KG L + GG+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 260 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 394
+ R L+S G + PR GER+RK+VRG + ++ + IV++
Sbjct: 193 KKRALLS-GPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ 236
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 60.1 bits (139), Expect = 3e-08
Identities = 48/132 (36%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Frame = +2
Query: 50 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 229
KLN+S+ Q L EV + KLR FYEK M E+ + +E N + F
Sbjct: 2 KLNISFLLIVYQILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIF 50
Query: 230 PMKQGVLTNSRVRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 406
MKQ VL + RV LL++ HS Y+P R E S++ V +S+L +VI+ G ++
Sbjct: 51 SMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRKD 109
Query: 407 IPGLTDGNVPRR 442
IPG T P+R
Sbjct: 110 IPGQTKRWAPKR 121
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 58.8 bits (136), Expect = 7e-08
Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
MK+N++ P G Q + DE I K +G +E LG+++ + GG+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 227 FPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 400
F +K+ + T R+++ + KG R +R K+++VRG I+ + +S + LV +
Sbjct: 60 FLLKKNLNTFERLKINVKKGSLGNRSHFKRKNLTKKRTVRGGILSSEISSINLVKLPNNV 119
Query: 401 QEIPGLTDGNVPRRLGPKRASKIRKLF 481
+E + ++L KR +K++ LF
Sbjct: 120 KE--SSVFPSKEQKLA-KRVTKLKTLF 143
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 58.8 bits (136), Expect = 7e-08
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Frame = -1
Query: 517 DITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQDREIGVNNTST 338
D+ +IFF + E+LT+ T T + I ++R+ L N++ Q + ++ +T
Sbjct: 95 DVLADVIFFGQSEELTNLARTLRTTETRHFGIGEARDVGVALLDNDQVQHGNVLGDDATT 154
Query: 337 ----N*FTFSLSIAARSVT*VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFI 173
+ FT + ++AA + AL H++ +T V Q AL H E+LLVV D + ++LPF+
Sbjct: 155 ARLASAFTLASAVAAEAAR--ALGHEQEHTLVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 58.8 bits (136), Expect = 7e-08
Identities = 36/81 (44%), Positives = 49/81 (60%)
Frame = +2
Query: 260 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 439
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 67
Query: 440 RLGPKRASKIRKLFNLSKEDD 502
RLGP R+S I K++ L +EDD
Sbjct: 68 RLGPVRSSNISKIYYLCEEDD 88
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 58.8 bits (136), Expect = 7e-08
Identities = 39/126 (30%), Positives = 66/126 (52%)
Frame = +2
Query: 41 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 220
A ++ V+ P +G FEV D F + +GA V+ +G + GY + + GG+D
Sbjct: 2 ATFQVAVADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSDD 58
Query: 221 QGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 400
G PM++ V + + +L+ +G + + P DGERKR +VRG V ++ L + I G
Sbjct: 59 AGRPMREDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAIDEHGE 117
Query: 401 QEIPGL 418
+ + L
Sbjct: 118 EPVAEL 123
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 54.8 bits (126), Expect = 1e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +2
Query: 101 VDEHKLRIFYEKRMGAEVEADQL-GDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLM 277
VD++K ++G EA+QL G K L++ GG+D GFPM+ V+ ++ ++L+
Sbjct: 121 VDQNKATNLVGLKIGDVFEANQLIGLPVK---LKITGGSDNSGFPMRFDVIGAAKRKILL 177
Query: 278 SKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVR 391
S G + P +GER+RK++RG + + + +IVR
Sbjct: 178 S-GPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR 214
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 54.8 bits (126), Expect = 1e-06
Identities = 27/94 (28%), Positives = 55/94 (58%)
Frame = +2
Query: 134 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 313
K++G E+ + E +GY L++ GG+D+ GF M+ + ++R+L+ +G Y +
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEK 84
Query: 314 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPG 415
G R+RKS+RG + +++++ +V G+ + G
Sbjct: 85 GLRRRKSLRGNTISKDITLINTKVVEYGSAPLGG 118
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 51.6 bits (118), Expect = 1e-05
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +2
Query: 185 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 364
GY L + GG+D GFPM + + R+L+S G + PR GER+RK+VRG + ++
Sbjct: 146 GYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKGERRRKTVRGNTITHDI 204
Query: 365 SVLALVIV 388
+ VIV
Sbjct: 205 VQINTVIV 212
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 49.6 bits (113), Expect = 5e-05
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +2
Query: 134 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 313
K++G EV+A LG GY + + GG+D+ G P ++ + R +LL+++G + P +
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLLLAEGVG-FHPVME 88
Query: 314 GERKRKSVR 340
GERKRK +R
Sbjct: 89 GERKRKMIR 97
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 48.0 bits (109), Expect = 1e-04
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +2
Query: 185 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 352
G ++ GG D G PM GV + R ++L++ G + PR GER+RKSVRG ++
Sbjct: 155 GLKFKIRGGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S6e -
Pyrobaculum aerophilum
Length = 148
Score = 47.6 bits (108), Expect = 2e-04
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Frame = +2
Query: 50 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEW---KGYVLRVAGGNDK 220
KL +S P +G + FE+ D R F ++G E++ L D KG +R+ GG+
Sbjct: 5 KLVLSDPMSGKARQFEIKDPLAQR-FIGLKIGDELDGVILKDLIELPKGAKIRITGGSGI 63
Query: 221 QGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG-CIVDANLSVLALVIVRKG 397
+G PM GV + + +++ G Y P + G +K+K VRG I D+ + + A+++ K
Sbjct: 64 EGAPMHPGVPGPVK-KYILADGPPGYWPPKKGMKKKKLVRGNTISDSIVQINAVIVYPKD 122
Query: 398 AQEIPGLTDG 427
P + G
Sbjct: 123 YTGPPAIPLG 132
>UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5;
Thermoplasmatales|Rep: 30S ribosomal protein S6e -
Thermoplasma volcanium
Length = 128
Score = 46.0 bits (104), Expect = 6e-04
Identities = 33/117 (28%), Positives = 63/117 (53%)
Frame = +2
Query: 59 VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMK 238
++ P TG E+ E ++ +++G EV D + + GY +++ GG+ GF M+
Sbjct: 8 IADPKTGKTYKREIPSE-RMSSLIGRKIGEEV--DGVFFDLVGYKMKITGGSSVDGFAMR 64
Query: 239 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 409
+ T + ++L+ K S YR ++G RKR + RG I+ ++++ + L I + G I
Sbjct: 65 PDLQTQGKKQILV-KYTSGYR-GKNGIRKRITARGSIIGSDITQINLKITQYGPTPI 119
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/68 (41%), Positives = 39/68 (57%)
Frame = +2
Query: 140 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 319
+G+E +A LG E K +R+ GG+DK G PM+ V +R +L+S+G R G
Sbjct: 39 IGSEADATALGLEGK---IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVG-LRDAERGG 94
Query: 320 RKRKSVRG 343
R RK VRG
Sbjct: 95 RTRKLVRG 102
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 44.4 bits (100), Expect = 0.002
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +2
Query: 185 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 364
GY +++ GG D GF MK + R R+L + G Y P+ G+R+RK +RG + ++
Sbjct: 47 GYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGVG-YVPKLPGQRRRKMMRGKEIAPDI 105
Query: 365 SVLALVIVRKGAQEIPGL 418
+ +V G++ I L
Sbjct: 106 VQVNAKVVEYGSKSIKAL 123
>UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyces
maris DSM 8797|Rep: Pseudouridine synthase -
Planctomyces maris DSM 8797
Length = 352
Score = 42.3 bits (95), Expect = 0.007
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +2
Query: 218 KQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 397
++G K+GV S ++ L +G S + E + + +R + V+ LV +R G
Sbjct: 171 RKGVRFKEGVFRVSGLKYLKKQGKSAFLELTLHEGQNREIRRMMARIGHKVIQLVRIRFG 230
Query: 398 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVR-RYVVKRVLPAK 541
+ L G RRL K+R+L N D+R R K PAK
Sbjct: 231 PLNLGKLKTGE-SRRLSDTELKKLRQLLNEKHSPDIRHRKGKKNAAPAK 278
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 40.7 bits (91), Expect = 0.021
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +2
Query: 140 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 319
+G E +A +G K L++ GG+DK G PM+ + +R +L+SKG + G+
Sbjct: 33 LGQETDASVVGLNGK---LKLTGGSDKSGVPMRNDIHGAARKYVLLSKGVG-LQDAEKGQ 88
Query: 320 RKRKSVRGCIVDANL 364
R RK +RG V +
Sbjct: 89 RVRKLMRGNTVSEEI 103
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 39.5 bits (88), Expect = 0.048
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +2
Query: 41 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 220
+V+K+ VS P +G E + L Y K++G ++ ++G + GY L++ GG+D
Sbjct: 5 SVVKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDI 59
Query: 221 QGFPMKQGV 247
GFPM++ V
Sbjct: 60 AGFPMRKEV 68
>UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1;
Xylella fastidiosa Temecula1|Rep: Putative
uncharacterized protein - Xylella fastidiosa (strain
Temecula1 / ATCC 700964)
Length = 109
Score = 35.1 bits (77), Expect = 1.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 184 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKG 285
G C RWR ++ + DE G + PC+ DV+G
Sbjct: 17 GACCMARWRCQEINVTDEVGYGMRLPCTPHDVRG 50
>UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcina
acetivorans|Rep: Glycosyltransferase - Methanosarcina
acetivorans
Length = 812
Score = 34.3 bits (75), Expect = 1.8
Identities = 19/101 (18%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +2
Query: 230 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV-DANLSVLALVIVRKGAQE 406
P K+ ++T++R ++L+ +SCY PR G+ + ++ + + ++++ +++ K Q
Sbjct: 405 PAKKNIITSNREKILVLATYSCYPPRGGGQHRLYNIYSLLAKEFDVTICSIIEANKQYQN 464
Query: 407 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV 529
+ + D + + P+ R + K+ Y V +
Sbjct: 465 L--VLDNGLKQICIPQSTEHARYQWEAEKKVGANLYDVAMI 503
>UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 541
Score = 33.5 bits (73), Expect = 3.2
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2
Query: 377 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV 517
L+ V +EI LT GNVP+ + R ++RK NLS EDD+ Y+
Sbjct: 494 LLRVNLSTKEISMLT-GNVPKTINMNRY-RLRKSLNLSSEDDLTDYL 538
>UniRef50_O86476 Cluster: Clumping factor B precursor; n=31;
Staphylococcus aureus|Rep: Clumping factor B precursor -
Staphylococcus aureus
Length = 913
Score = 33.5 bits (73), Expect = 3.2
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 50 KLNVSYPAT-GCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
KL+ SY A L EV D+ K RI+YE A ++ GD K YV+ V G D G
Sbjct: 441 KLSDSYYADPNDSNLKEVTDQFKNRIYYEHPNVASIK---FGDITKTYVVLVEGHYDNTG 497
Query: 227 FPMKQGVL 250
+K V+
Sbjct: 498 KNLKTQVI 505
>UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;
n=24; Bacteria|Rep: Phytoene dehydrogenase-related
protein - Rhodopseudomonas palustris
Length = 590
Score = 33.1 bits (72), Expect = 4.2
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -3
Query: 251 SGRPVSSGILACRCRQ-RHEVHSPSIHRLTDQPL 153
SGRPV+SGILA C Q +++ +P HR + P+
Sbjct: 22 SGRPVTSGILASLCEQWQNQPRTPLSHRSGNLPM 55
>UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os11g0676800 protein -
Oryza sativa subsp. japonica (Rice)
Length = 822
Score = 32.7 bits (71), Expect = 5.6
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 326 RKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKE 496
+KS + C N ++ LV++RKG + LT G + K S RK+ N+SK+
Sbjct: 227 KKSSQSCSGRLNSYIVVLVMLRKGGWKSQQLTIGLARHEVAVKIRSLNRKIENISKD 283
>UniRef50_UPI0001552B57 Cluster: PREDICTED: hypothetical protein;
n=2; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 215
Score = 32.3 bits (70), Expect = 7.3
Identities = 20/60 (33%), Positives = 24/60 (40%)
Frame = +2
Query: 143 GAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGER 322
GAE+ GDE G LR G +QG+ R R + HS R R G R
Sbjct: 44 GAEIPPAGAGDEPGGSTLRPCAGTRRQGYVTNARAPPRPRRRCFRAVRHSISRETRPGAR 103
>UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;
n=1; Haemophilus ducreyi|Rep: Possible uroporphyrinogen
III synthase - Haemophilus ducreyi
Length = 251
Score = 32.3 bits (70), Expect = 7.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL 169
M + ++YPA+ QKL ++ +H++ Y+ E+ AD L
Sbjct: 1 MNVLITYPASRAQKLVDMCQQHRIFAIYQPIFSVELGADLL 41
>UniRef50_A1TZN4 Cluster: Flagellar hook-associated protein FlgK;
n=2; Marinobacter|Rep: Flagellar hook-associated protein
FlgK - Marinobacter aquaeolei (strain ATCC 700491 / DSM
11845 / VT8)(Marinobacter hydrocarbonoclasticus (strain
DSM 11845))
Length = 688
Score = 32.3 bits (70), Expect = 7.3
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +2
Query: 215 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 394
D P +Q VL+ ++ + +G + ++ K + +G + DAN + ++ +
Sbjct: 123 DPTSLPQRQLVLSEAQQLVNRFQGLNQEFIQQRESVKTQMQQG-VKDANTLLKSIAELNL 181
Query: 395 GAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 487
E PGL G P L KR K+R+L L
Sbjct: 182 AISESPGLAQGREPLELMDKRDEKLRQLSEL 212
>UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4;
Actinomycetales|Rep: ATP-dependent helicase HrpA -
Nocardioides sp. (strain BAA-499 / JS614)
Length = 1282
Score = 32.3 bits (70), Expect = 7.3
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 98 VVDEHKLRIFYEKRMGAEVEADQLGDEW 181
VVDEH L FY+ R+GA+V + D+W
Sbjct: 774 VVDEHTLFDFYDARVGADVVSGAHFDQW 801
>UniRef50_UPI00015564F7 Cluster: PREDICTED: similar to likely
ortholog of H. sapiens myosin XVB (MYO15B); n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
likely ortholog of H. sapiens myosin XVB (MYO15B) -
Ornithorhynchus anatinus
Length = 1593
Score = 31.9 bits (69), Expect = 9.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 125 FYEKRMGAEVEADQLGDEWKGYVLRVAG 208
F E+R AEVE+ G++W G+VL+ G
Sbjct: 876 FTEERYSAEVESWTTGEQWAGWVLQTRG 903
>UniRef50_A6UN38 Cluster: Response regulator receiver protein; n=1;
Sinorhizobium medicae WSM419|Rep: Response regulator
receiver protein - Sinorhizobium medicae WSM419
Length = 406
Score = 31.9 bits (69), Expect = 9.7
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Frame = +2
Query: 416 LTDGNVPRRLG---PKRASKIRKLFNLSKEDDVRR--YVV 520
L D N+PRRLG P+R + L +L +E D+RR Y+V
Sbjct: 52 LLDVNIPRRLGDRKPQRGGGLELLKDLGRESDLRRPTYIV 91
>UniRef50_A0N0V6 Cluster: Putative regulatory protein; n=2; Azoarcus
anaerobius|Rep: Putative regulatory protein - Azoarcus
anaerobius
Length = 661
Score = 31.9 bits (69), Expect = 9.7
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 272 LMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGP 451
++ GH YR R +R+ D ++ + L ++R +E G D V R+LG
Sbjct: 582 IIKPGHLAYRMRDRRTPERQHAAASSRDQSIPAIQLDLIRSAIEEFNGNVD-LVGRKLGL 640
Query: 452 KRASKIRKL 478
RA+ R++
Sbjct: 641 SRATVYRRM 649
>UniRef50_A6QZZ0 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 372
Score = 31.9 bits (69), Expect = 9.7
Identities = 26/69 (37%), Positives = 36/69 (52%)
Frame = -3
Query: 257 CLSGRPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGI 78
C+S P++ A R + RH++H+P + R P RRP A +E P RT+S
Sbjct: 211 CISHPPIA----ATRHQHRHDLHTP-LPRPKFTP--RRPRA--HSFEDNIHPLFRTSSPE 261
Query: 77 PLPGTKRLT 51
P PGT R T
Sbjct: 262 PPPGTTRGT 270
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 585,087,822
Number of Sequences: 1657284
Number of extensions: 12604484
Number of successful extensions: 36822
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 35615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36785
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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