Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c08f
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              229   1e-60
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   38   0.004
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   2.4  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   3.2  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   3.2  
SB_21717| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.64)             28   4.2  
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  229 bits (560), Expect = 1e-60
 Identities = 102/131 (77%), Positives = 116/131 (88%)
 Frame = +2

Query: 149 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 328
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 329 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVR 508
           KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 509 RYVVKRVLPAK 541
           +YV++R LP K
Sbjct: 122 QYVIRRPLPEK 132


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -1

Query: 289 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 125
           V L  Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 335 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 475
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 155 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 238
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 425 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 523
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_21717| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.64)
          Length = 499

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -3

Query: 161 QPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTKRLTS*LRSIPSNVSHEKK 6
           +P L R   F      CARPP+ T  G+      R T  +++ PS    EKK
Sbjct: 399 RPKLGRVAIFHGHIPHCARPPVSTFFGV------RYTLAIKTAPSKAIAEKK 444


>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 299 CNMSGPLTSEDEHGCLSGRPVSSGILACR 213
           C  S  L +E   GC S RP+ SG  +CR
Sbjct: 105 CTSSAVLPAEKGGGCTSARPIRSG--SCR 131


>SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 125 FYEKRMGAEVEADQLGDEWKGYVL-RVAGGNDKQG 226
           FY K++   ++   L +EW+ +V   +A G DK G
Sbjct: 10  FYNKKLEDYMKNTSLNEEWQDWVRHNIAAGCDKNG 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,464,196
Number of Sequences: 59808
Number of extensions: 415430
Number of successful extensions: 1192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)