Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c08f
(541 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical ... 253 5e-68
AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical ... 29 2.8
AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical... 29 2.8
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 28 4.9
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ... 27 6.5
Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 27 8.6
>AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical
protein Y71A12B.1 protein.
Length = 246
Score = 253 bits (620), Expect = 5e-68
Identities = 116/158 (73%), Positives = 135/158 (85%)
Frame = +2
Query: 47 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 226
M+LN +YPATG QK FEV +E KLR+F+EKRM EV D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60
Query: 227 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 406
FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG E
Sbjct: 61 FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120
Query: 407 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 520
I GLTD +PR+LGPKRASKIRKLFNL+K DDV +YV+
Sbjct: 121 IEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVI 158
>AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical
protein Y87G2A.6 protein.
Length = 629
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 161 QPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTKRLTS*LRSIPSNVSHEK 9
+P+ + P +KR E PP P K + LRSIPS+ +EK
Sbjct: 2 EPVFKEPSPKKKRVE---NPPENAPDAPKKPQLKHESEFLRSIPSSSQYEK 49
>AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical
protein F40G9.1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 65 YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 223
Y G ++FE+ E K RIF EK + + ++ ++ L++ G NDK+
Sbjct: 6 YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 80 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 223
C K F+ + ++ E+++ E E Q D W G LR G DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319
>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
protein Y48G1C.5 protein.
Length = 1161
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 371 LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 520
L L +K QE+ P +GPK A +IR L L + + +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059
>Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical
protein T10H4.2 protein.
Length = 363
Score = 27.1 bits (57), Expect = 8.6
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = +3
Query: 258 AVFVF*CQRATHVTDRA-----AMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*L 422
A+ F C+ HVT + +E +V++ + V+ I S+ ++ + + F
Sbjct: 58 AIMYFWCKPNAHVTQTSFTIFTILENSHVSKDIGVIAVTIWCSFYAMMLSLLSIHFF--- 114
Query: 423 MEMYPAV*VPNVLPKSVSCSTLAKKMMYVVMSSN 524
Y +V P +L K SC + K +Y++ S+
Sbjct: 115 -YRYTSVTAPILLMKRFSCRYIFKYTLYILTFSS 147
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 197 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 60
+ ++ + +++ + LRR KRY C L+T GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 197 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 60
+ ++ + +++ + LRR KRY C L+T GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 197 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 60
+ ++ + +++ + LRR KRY C L+T GI L G K
Sbjct: 391 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,361,709
Number of Sequences: 27780
Number of extensions: 293539
Number of successful extensions: 791
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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