Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c07r
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    29   0.92 
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    28   1.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   3.7  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    27   3.7  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   8.6  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   8.6  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 312 SRPGNNASAIDVTCVSPDIAP-LCEWYVGDDSLGSYHLPTFVNI 440
           +RP N  + ID T  +PD+ P + +  +  + +GS H P ++++
Sbjct: 259 TRPTNYGTRIDYTLATPDLLPWVQDADIMAEVMGSDHCPVYLDL 302


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 237 RGRELFDIFDDADLCILNTGDPTTISRPGNNASAIDVTCVSPDIAPLCEWYVGDD 401
           RG  + D+ DD ++ +    DP+  S       +  +   + DI P C++Y G +
Sbjct: 75  RGFLVEDLSDDVNMVLTAIDDPSLSSEIYKLCKSKKIPVNAADIPPECDFYFGSE 129


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
 Frame = +3

Query: 231 NSRGRELFDIFDDADLCI-LNTGDPTTISRPGNNASAIDVTCVSPDI-APLCEWYVGDDS 404
           +S G  LF +  DA + + +   D   +SR          T VS  I    C  YV    
Sbjct: 365 SSSGNSLFVVLTDAVIIVHVQEDDKDIVSRTSWEEVIRMNTNVSGGIFMSTCYKYV---- 420

Query: 405 LGSYHLPTFVNIITSTQKYTVQESIHKYLYNKTNWNMYKDKSKD-IFDNFSP 557
           LG Y +PT    I +      +  +H   +   N ++ K K ++ +F +F P
Sbjct: 421 LGKYSIPTESCFIATPYSGIAEIEVHSLEHPANNESLVKSKLEEAVFYSFLP 472


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 522 DKSKDIFDNFSPSTVDPLVQYDEFSKLLLSLKENCI 629
           D+S +++DN   S++D L+  D  SKL   + E CI
Sbjct: 531 DRSLELYDNDKLSSIDALLIQD--SKLREMVSEKCI 564


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 316 LEIVVGSPVFKIHKSASSNISNNSRPLELEVSQP 215
           L +VV S VF+  K    N  N + P+E   S P
Sbjct: 286 LTLVVKSAVFREDKQNDENEKNENEPIEASESAP 319


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 441 ITSTQKYTVQESIHKYLYNKTNWNMYKDKSKDIFDNF 551
           I  T+ Y +QES+HKY   K N   Y     +I D F
Sbjct: 228 IYRTRSYFLQESLHKYESTK-NKIAYLSFGSNIGDKF 263


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 367 MSGLTQVTSMADALLPGLEIVVGSPVFKIHKSASSNISNNSR 242
           MSG+ +   + D+L      + GS + K+   +  N+S N++
Sbjct: 1   MSGIAEFDGILDSLEHSKTGISGSKILKLTNLSMENVSENAQ 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,220
Number of Sequences: 5004
Number of extensions: 57748
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)