Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c07r
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    31   0.73 
12_02_0700 + 22259921-22260207,22264678-22264750,22265062-222658...    30   1.7  
02_02_0672 - 12814610-12815703,12815743-12816226                       29   3.9  
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184...    29   5.2  

>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 552 KNYQIYLWICLCTYSSLFYYINIYV*TLELYIFEL 448
           ++ Q YLW  LCT S    +IN+Y+  ++  +F L
Sbjct: 822 RDVQKYLWPRLCTISKEKLHINVYIVNIDCVLFPL 856


>12_02_0700 +
           22259921-22260207,22264678-22264750,22265062-22265802,
           22265849-22266424,22266505-22266957
          Length = 709

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 267 DADLCILNTGDPTTISRPGNNASA 338
           DAD+  L  GDP+ +S  GNNAS+
Sbjct: 591 DADIEALPDGDPSRVSNGGNNASS 614


>02_02_0672 - 12814610-12815703,12815743-12816226
          Length = 525

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 83  RTTYCYYRNSYKLNILIES 27
           R  YC+YR  YKLN+++++
Sbjct: 502 RVGYCHYRTFYKLNLILDA 520


>02_05_1000 +
           33417357-33417600,33417692-33417744,33418376-33418413,
           33418720-33419114,33420092-33420221,33420512-33421343
          Length = 563

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 72  VCGPVSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRG 242
           +CG V       PP+ + +S S L +I L +    L       +N AFGC T++S G
Sbjct: 342 MCGGVGTAAAAAPPHQA-LSSSALERIQLHMRLQGL-------YNSAFGCTTTSSNG 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,156,273
Number of Sequences: 37544
Number of extensions: 309438
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)