Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c07r
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 64 8e-11
U97592-2|AAB52870.1| 462|Caenorhabditis elegans Temporarily ass... 29 2.6
U97592-1|AAB52871.3| 638|Caenorhabditis elegans Temporarily ass... 29 2.6
AL132863-6|CAB60577.1| 141|Caenorhabditis elegans Hypothetical ... 29 4.6
Z48009-4|CAA88084.1| 329|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 28 6.1
AF016435-5|AAB65881.1| 538|Caenorhabditis elegans Hypothetical ... 28 6.1
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 8.0
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 64.5 bits (150), Expect = 8e-11
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 6/183 (3%)
Frame = +3
Query: 99 VYCPPNNSSIS---LSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTS-NSRGRELFDIFD 266
VY PP +SS + L T I Q ++SGD NAH+ A+ + S ++RGREL ++ D
Sbjct: 6 VYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAELID 65
Query: 267 -DADLCILNTGDPTTISRPGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYHLPTFVNII 443
DL I N T + S+ D+T + D+A C W LGS H+P + I
Sbjct: 66 LHPDLIIQNEQVHTRADT--YSISSPDITICTADLATKCHWST-LYKLGSDHIPMKLKIN 122
Query: 444 TSTQKYTVQESIHKYLYNKTNWNMYKDKSKDIFDNFS-PSTVDPLVQYDEFSKLLLSLKE 620
+ + + + K NW +++D + + +S P P+ ++ F+K++L +
Sbjct: 123 QAATPKRPKRLVAN--FKKANWQLFRDHIESRINGYSGPMDAIPMEKF--FNKVILEADK 178
Query: 621 NCI 629
+
Sbjct: 179 KAV 181
>U97592-2|AAB52870.1| 462|Caenorhabditis elegans Temporarily
assigned gene nameprotein 150, isoform a protein.
Length = 462
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +3
Query: 207 IAFGCDTSNSRGRELFDIFDDA--DLCILNTGDPTT----ISRPGNNASAID 344
I+ G DTS+ G F+++DDA D ++ T D T I R G + +A D
Sbjct: 327 ISLGYDTSSRTGASRFEVWDDAKTDAYVIETIDQTARTKWIQRLGKSETAQD 378
>U97592-1|AAB52871.3| 638|Caenorhabditis elegans Temporarily
assigned gene nameprotein 150, isoform b protein.
Length = 638
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +3
Query: 207 IAFGCDTSNSRGRELFDIFDDA--DLCILNTGDPTT----ISRPGNNASAID 344
I+ G DTS+ G F+++DDA D ++ T D T I R G + +A D
Sbjct: 503 ISLGYDTSSRTGASRFEVWDDAKTDAYVIETIDQTARTKWIQRLGKSETAQD 554
>AL132863-6|CAB60577.1| 141|Caenorhabditis elegans Hypothetical
protein Y37H2A.10 protein.
Length = 141
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 288 NTGDPTTISRPG---NNASAIDVTCVSPDIAPLCEWY 389
N GD T I PG NN + + +TC + PL +Y
Sbjct: 61 NFGDMTPIQTPGTDANNCAILTLTCQGTPVDPLNNYY 97
>Z48009-4|CAA88084.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.6 protein.
Length = 329
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/40 (22%), Positives = 30/40 (75%)
Frame = +1
Query: 217 VVILPIQEVVNYLIYLMMLIYVF*IQVTLLLFLDLVIMHQ 336
+V++ IQE +++ I+ +++++++ + +L+F ++++HQ
Sbjct: 257 IVLVYIQESISHRIFNLLVVWLYAFPIVVLMF-PVILVHQ 295
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 28.3 bits (60), Expect = 6.1
Identities = 29/154 (18%), Positives = 60/154 (38%)
Frame = +3
Query: 81 PVSVLCVYCPPNNSSISLSTLRKIILQLPKPCLVSGDFNAHNIAFGCDTSNSRGRELFDI 260
P +C+ C P+ + + I+ L +PCL+ G+ N + F C + + I
Sbjct: 1680 PTKEICIVCHPDTTIFRCTN----IVNLHEPCLICGN-NIYK--FSCSNYEHHNQYVTPI 1732
Query: 261 FDDADLCILNTGDPTTISRPGNNASAIDVTCVSPDIAPLCEWYVGDDSLGSYHLPTFVNI 440
D L D + + + +P + + + G+ ++ ++ T
Sbjct: 1733 ISIFDQPKLKPVDEEFKKKLAVKNETV-IYENTPAVWNVKAYRAGESAVNTFFAETDDRG 1791
Query: 441 ITSTQKYTVQESIHKYLYNKTNWNMYKDKSKDIF 542
+ Q + H+ +N W M +DKS+ +F
Sbjct: 1792 FKTLQGDQLAGFFHRE-FNWVTWRMDEDKSERVF 1824
>AF016435-5|AAB65881.1| 538|Caenorhabditis elegans Hypothetical
protein F59D6.6 protein.
Length = 538
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/69 (21%), Positives = 34/69 (49%)
Frame = +3
Query: 345 VTCVSPDIAPLCEWYVGDDSLGSYHLPTFVNIITSTQKYTVQESIHKYLYNKTNWNMYKD 524
+ +S +I P+ + + + +L +LP NI+ ++ + + H ++ N NM+
Sbjct: 420 IAAISEEI-PVIQ-IISNPNLKKANLPEVSNILARGKRIGIVQDNHPDIFKAKNCNMFVS 477
Query: 525 KSKDIFDNF 551
SK +F +
Sbjct: 478 ISKTMFQEY 486
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 441 ITSTQKYTVQESIHK---YLYNKTNWNMYKDKSKDIFDNFSPSTV 566
+ ST+K V + + +L N W M +D+S+ NF PSTV
Sbjct: 164 VVSTKKSDVDSVVTRLNIHLTNPAFW-MSQDRSRSFLANFKPSTV 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,048,243
Number of Sequences: 27780
Number of extensions: 313739
Number of successful extensions: 965
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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