Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c07r
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    26   0.43 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    26   0.43 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    26   0.43 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    26   0.43 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    26   0.43 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    26   0.43 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.2  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   9.2  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 IITSTQKYTVQESIHKYLYNKTNWN 512
           II+S    T+  + +KY YN  N+N
Sbjct: 80  IISSLSNNTIHNNNYKYNYNNNNYN 104


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 IITSTQKYTVQESIHKYLYNKTNWN 512
           II+S    T+  + +KY YN  N+N
Sbjct: 80  IISSLSNNTIHNNNYKYNYNNNNYN 104


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 IITSTQKYTVQESIHKYLYNKTNWN 512
           II+S    T+  + +KY YN  N+N
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYN 105


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 IITSTQKYTVQESIHKYLYNKTNWN 512
           II+S    T+  + +KY YN  N+N
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYN 105


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 IITSTQKYTVQESIHKYLYNKTNWN 512
           II+S    T+  + +KY YN  N+N
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYN 105


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 438 IITSTQKYTVQESIHKYLYNKTNWN 512
           II+S    T+  + +KY YN  N+N
Sbjct: 81  IISSLSNNTIHNNNYKYNYNNNNYN 105


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 294 GDPTTISRPGNNASAIDVTCVSPDIAPLCEWYVGDDSLGS 413
           G PT ++ PG ++  I + C   + A      V    +GS
Sbjct: 372 GGPTILTTPGLDSDGIRLPCREVEAAATARNVVAPFLIGS 411


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 492 YNKTNWNMYKD 524
           YNK N N+YKD
Sbjct: 304 YNKFNNNVYKD 314


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 492 YNKTNWNMYKD 524
           YNK N N+YKD
Sbjct: 357 YNKFNNNVYKD 367


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 400 SSPTYHSQSGA 368
           S PT HSQSG+
Sbjct: 128 SEPTVHSQSGS 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,140
Number of Sequences: 438
Number of extensions: 4127
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)