Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c07f
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   1.5  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    27   2.6  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   3.4  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.0  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   6.0  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   7.9  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   7.9  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = -2

Query: 427 DVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKGLMQ 248
           D++  +D++   +LI +L S     K+    F     ++L   Y    +  K    G  Q
Sbjct: 370 DIKACFDSIPHDKLIALLSS-----KIKDQRFIQLIRKALNAGYLTE-NRYKYDIVGTPQ 423

Query: 247 GSSLSPILYNLYTSQIYRHVTEL 179
           GS +SPIL N+Y  Q+   +  L
Sbjct: 424 GSIVSPILANIYLHQLDEFIENL 446


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 219 LYRIGDKEDPCINPLKANFGP*KTLLY 299
           ++R+G++E+P + P  A F P  +LLY
Sbjct: 859 IFRVGNEENPLVYPNNATFSP--SLLY 883


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -2

Query: 412 YDNVDLHQ--LIRVLY-SLG-FPGKLLKWIFNMYFGRSLYIKYNNVFHG 278
           YDN ++ +  L+   Y S G FP + L W FN  + R   + Y    HG
Sbjct: 285 YDNANMMEQSLLNFAYNSAGAFPWESLDWTFNGLWARKNDLPYLKAVHG 333


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 427 DVQGAYDNVDLHQLIRVLY-SLGFPGKLLK 341
           +VQG +  VD+HQ  R  Y  LG P K L+
Sbjct: 397 NVQGPFTGVDMHQWYRAGYFPLGLPIKRLE 426


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 337 SILKVFLGNPKNIAP*LIGEDLHYHMP 417
           +IL V +   K +AP +IG  L +H+P
Sbjct: 216 NILPVLVKRRKELAPKIIGSLLEFHLP 242


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = -1

Query: 401 RSSPIN*GAIFFGFPRKTFKMDFQYVFWSFFIH*IQ*CFSWSKISFQGVDARVFFIS 231
           RS  +  G     FP      D     W  FIH +    S+S ++  G+D  +  +S
Sbjct: 92  RSDEVVNGFPLIYFPEDLASHDISGKDWKSFIHDVNMACSFSDVALMGLDQILNLVS 148


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 471 KSVCYQVLLQFVFSLMCRGHMIM 403
           K+V  Q L +  F L+CR HM++
Sbjct: 413 KNVIRQFLAKHDFDLICRAHMVV 435


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 126 KFQR-LILVTDIMKLMDFDENNQTKHGNSLANNPTRSAL 13
           K+ R L+ +TD    ++F E N  K+ ++++NN T   L
Sbjct: 203 KYPRALVSMTDTEDAIEFMEKNVEKNKSAMSNNITSDIL 241


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 388 LIRVLYSLGFPGKLLKWIFNMYF 320
           L+  L+ +G+PG L  W+  M+F
Sbjct: 88  LVFGLWYVGYPGLLWAWLIAMFF 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,403
Number of Sequences: 5004
Number of extensions: 57431
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)