Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c07f
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    44   9e-05
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    41   6e-04
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    40   0.001
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    33   0.16 
01_01_0418 - 3142659-3145622                                           29   2.0  
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340...    29   2.7  

>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 27/110 (24%), Positives = 54/110 (49%)
 Frame = -2

Query: 469 KCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNN 290
           +C  S    + + LD + A+D ++   ++ V+  +GFP K ++W+  ++   S  +  N 
Sbjct: 443 QCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNG 502

Query: 289 VFHGPKLAFKGLMQGSSLSPILYNLYTSQIYRHVTELWRK*GRLIPPLLE 140
           V        +G+ QG  LS +L+ L    + R + + + + G L  P+ E
Sbjct: 503 VPGNSFKCRRGVRQGVPLSLLLFVLGAELLQRIINKAFHQ-GLLSKPINE 551


>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 25/94 (26%), Positives = 41/94 (43%)
 Frame = -2

Query: 475 MKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKY 296
           ++ C       + + LD   A+D+V+   L ++L   GFP   + WI N+       +  
Sbjct: 26  IQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVLL 85

Query: 295 NNVFHGPKLAFKGLMQGSSLSPILYNLYTSQIYR 194
           + +        KGL QG  LSP L+ L    + R
Sbjct: 86  HGIPGKWITCKKGLRQGDPLSPYLFILVADVLQR 119


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 27/94 (28%), Positives = 39/94 (41%)
 Frame = -2

Query: 475  MKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKY 296
            ++ C       I V LD   A+D+V    L ++L   GFP   + WI  +       +  
Sbjct: 1041 IQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAVLL 1100

Query: 295  NNVFHGPKLAFKGLMQGSSLSPILYNLYTSQIYR 194
            N V        KGL+QG  LS  L+ L    + R
Sbjct: 1101 NGVPGRWICCKKGLLQGDPLSSYLFILVADVLQR 1134


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = -2

Query: 430 LDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKGLM 251
           +D+  AYD ++   L   L  LGF    +  +          I+ N       +  +G+ 
Sbjct: 257 IDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRINGELTDTVVPSRGIR 316

Query: 250 QGSSLSPILYNLYT 209
           QG  +SP L+ L T
Sbjct: 317 QGDPISPYLFLLCT 330


>01_01_0418 - 3142659-3145622
          Length = 987

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -2

Query: 484 LTDMKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLY 305
           L D   C LSG     +     GA  N  L +L   LY   F G++ + +FN+   R +Y
Sbjct: 377 LLDFSNCGLSGKIPSAI-----GAIKN--LKRL--ALYKCNFSGQIPQDLFNLTQLRVIY 427

Query: 304 IKYNN 290
           ++YNN
Sbjct: 428 LQYNN 432


>02_01_0473 -
           3403547-3404241,3404455-3404983,3405299-3405477,
           3405868-3405952,3406136-3406482,3407061-3407159,
           3408135-3408636
          Length = 811

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 27/97 (27%), Positives = 37/97 (38%)
 Frame = -2

Query: 472 KKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYN 293
           +KC         + LD+  AYD VD   L  VL  +GF     KW  +            
Sbjct: 224 QKCKRENQNFCALKLDLSKAYDRVDWAFLDGVLQRMGFGDTWRKWTMSCV---------- 273

Query: 292 NVFHGPKLAFKGLMQGSSLSPILYNLYTSQIYRHVTE 182
                     +GL QG  LSP L+ L+ +    H+ E
Sbjct: 274 -----DICPIRGLRQGDPLSPYLF-LFIADGLSHILE 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,135,348
Number of Sequences: 37544
Number of extensions: 315959
Number of successful extensions: 582
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)