Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c07f
(575 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 46 4e-05
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 46 4e-05
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 42 5e-04
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 42 6e-04
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 40 0.002
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 40 0.003
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 39 0.006
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 38 0.010
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 38 0.010
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 38 0.010
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 37 0.017
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 36 0.052
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 35 0.069
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 33 0.28
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 31 1.5
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 31 1.5
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 31 1.5
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 31 1.5
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 30 2.6
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 30 2.6
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 30 2.6
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 30 2.6
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 30 2.6
AY220741-1|AAO74886.1| 471|Drosophila melanogaster putative ETH... 29 6.0
AF505863-1|AAO20966.1| 471|Drosophila melanogaster G-protein co... 29 6.0
AE014297-2964|AAF55872.2| 471|Drosophila melanogaster CG5911-PA... 29 6.0
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 28 7.9
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 28 7.9
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 46.0 bits (104), Expect = 4e-05
Identities = 27/92 (29%), Positives = 46/92 (50%)
Frame = -2
Query: 475 MKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKY 296
+K+ + S + V LD++ A+D V L+ L +G P L+K + N R +
Sbjct: 593 IKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNL 652
Query: 295 NNVFHGPKLAFKGLMQGSSLSPILYNLYTSQI 200
N+ ++ G+ QGS L P L+N++T I
Sbjct: 653 NSSQSARRILNAGVPQGSVLGPTLFNIFTHDI 684
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 46.0 bits (104), Expect = 4e-05
Identities = 27/92 (29%), Positives = 46/92 (50%)
Frame = -2
Query: 475 MKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKY 296
+K+ + S + V LD++ A+D V L+ L +G P L+K + N R +
Sbjct: 541 IKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNL 600
Query: 295 NNVFHGPKLAFKGLMQGSSLSPILYNLYTSQI 200
N+ ++ G+ QGS L P L+N++T I
Sbjct: 601 NSSQSARRILNAGVPQGSVLGPTLFNIFTHDI 632
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 42.3 bits (95), Expect = 5e-04
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKG 257
V LD A+D V +H +I+ L K++K+I N R + ++ P F G
Sbjct: 573 VTLDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNG 632
Query: 256 LMQGSSLSPILY 221
+ QGS +S IL+
Sbjct: 633 IPQGSPISVILF 644
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 41.9 bits (94), Expect = 6e-04
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKG 257
VF+D+Q A+D V LI + L FP + + R ++ N + P++ G
Sbjct: 582 VFIDMQQAFDRVWHDGLISKVKKL-FPAPYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAG 640
Query: 256 LMQGSSLSPILYNLYTSQI 200
+ QGS L P+LY+++T+ +
Sbjct: 641 VPQGSVLGPLLYSVFTADL 659
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = -2
Query: 430 LDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKGLM 251
LDV A+D++ + L + G P + ++ N Y G + + + +G+
Sbjct: 481 LDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVK 540
Query: 250 QGSSLSPILYNLYTSQIYRHV-TELWRK*GRLI 155
QG LSPIL+NL ++ R + +E+ K G I
Sbjct: 541 QGDPLSPILFNLVMDRLLRTLPSEIGAKVGNAI 573
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = -2
Query: 427 DVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKGLMQ 248
D + A+D V +H ++ L G +L I RS ++ NNV + G+ Q
Sbjct: 584 DFERAFDRVGIHAVLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQ 643
Query: 247 GSSLSPILYNLYTSQIYRHVT 185
GS LS +L+ + I VT
Sbjct: 644 GSPLSVVLFMIAIEDINDIVT 664
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 38.7 bits (86), Expect = 0.006
Identities = 25/79 (31%), Positives = 37/79 (46%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKG 257
VFLDV A+D V L L+ + + P K + + + R ++ N G
Sbjct: 579 VFLDVSQAFDKVWLDGLMFKI-KISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAG 637
Query: 256 LMQGSSLSPILYNLYTSQI 200
+ QGS L P LY +YT+ I
Sbjct: 638 VPQGSVLGPTLYLIYTADI 656
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 37.9 bits (84), Expect = 0.010
Identities = 26/77 (33%), Positives = 37/77 (48%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKG 257
+FLDV A+D V L L+ + L P K + + + R I+ + G
Sbjct: 577 IFLDVAQAFDRVWLDGLLFKIIKL-LPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAG 635
Query: 256 LMQGSSLSPILYNLYTS 206
+ QGS L PILY LYT+
Sbjct: 636 VPQGSVLGPILYTLYTA 652
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 37.9 bits (84), Expect = 0.010
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = -2
Query: 445 AICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLA 266
A+ FLD+Q A+D V L+ L FP +L + + R+ ++ + K
Sbjct: 580 AVGAFLDIQQAFDRVWHPGLLYKAKRL-FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPI 638
Query: 265 FKGLMQGSSLSPILYNLYTSQIYRH--VTEL 179
G+ QGS L P LY+++ S + H VTE+
Sbjct: 639 AAGVPQGSVLGPTLYSVFASDMPTHTPVTEV 669
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 37.9 bits (84), Expect = 0.010
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = -2
Query: 445 AICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLA 266
A+ FLD+Q A+D V L+ L FP +L + + R+ ++ + K
Sbjct: 382 AVGAFLDIQQAFDRVWHPGLLYKAKRL-FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPI 440
Query: 265 FKGLMQGSSLSPILYNLYTSQIYRH--VTEL 179
G+ QGS L P LY+++ S + H VTE+
Sbjct: 441 AAGVPQGSVLGPTLYSVFASDMPTHTPVTEV 471
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 37.1 bits (82), Expect = 0.017
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKG 257
+FLDV A+D V L L+ + L P + K + + R ++ ++ G
Sbjct: 118 LFLDVAQAFDRVWLDGLMFKIIQL-LPQNIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAG 176
Query: 256 LMQGSSLSPILYNLYTSQI 200
+ QGS L PILY LYT+ I
Sbjct: 177 VPQGSVLGPILYTLYTADI 195
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 35.5 bits (78), Expect = 0.052
Identities = 25/77 (32%), Positives = 36/77 (46%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKG 257
+FLDV A+D V L L+ + L P K + + + I+ + G
Sbjct: 577 IFLDVAQAFDRVWLDGLLFKIIKL-LPQNTHKLLKSYLYNTVFAIRCDTSTSRDCAIEAG 635
Query: 256 LMQGSSLSPILYNLYTS 206
+ QGS L PILY LYT+
Sbjct: 636 VPQGSVLGPILYTLYTA 652
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 35.1 bits (77), Expect = 0.069
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKG 257
+FLD++ A+D V H +++ P + + GR +++++ G
Sbjct: 581 LFLDIREAFDRV-WHIGLQLKIKQTLPAPYFGLLKSYLEGRRFAVRFHSAISTEHNVAAG 639
Query: 256 LMQGSSLSPILYNLYTSQIYRHVTELWRK 170
+ QGS L P+LY LY+ + + L+ K
Sbjct: 640 VPQGSVLGPLLYCLYSHDMPQPDVSLYGK 668
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 33.1 bits (72), Expect = 0.28
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = -2
Query: 460 LSGSTAIC--VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNV 287
L GS C + LDV+ A++ ++ + +LG P + I N + R L+ +
Sbjct: 544 LGGSKKYCAIITLDVKNAFNTARWPIILGAMRNLGVPDYIRGVIGNYFRDRVLWYVTEDG 603
Query: 286 FHGPKLAFKGLMQGSSLSPILYNL 215
+++ G+ QGS L PIL+N+
Sbjct: 604 PRSHQVS-AGVPQGSVLGPILWNI 626
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 433 FLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFK-G 257
FLD+ A+D V L+ L L P L + N R+ ++ + + G
Sbjct: 183 FLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAG 241
Query: 256 LMQGSSLSPILYNLYTSQI 200
+ QGS L P+LY++Y+S +
Sbjct: 242 VPQGSILGPVLYSIYSSDM 260
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 433 FLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFK-G 257
FLD+ A+D V L+ L L P L + N R+ ++ + + G
Sbjct: 630 FLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAG 688
Query: 256 LMQGSSLSPILYNLYTSQI 200
+ QGS L P+LY++Y+S +
Sbjct: 689 VPQGSILGPVLYSIYSSDM 707
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 433 FLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFK-G 257
FLD+ A+D V L+ L L P L + N R+ ++ + + G
Sbjct: 630 FLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAG 688
Query: 256 LMQGSSLSPILYNLYTSQI 200
+ QGS L P+LY++Y+S +
Sbjct: 689 VPQGSILGPVLYSIYSSDM 707
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 433 FLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFK-G 257
FLD+ A+D V L+ L L P L + N R+ ++ + + G
Sbjct: 630 FLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAG 688
Query: 256 LMQGSSLSPILYNLYTSQI 200
+ QGS L P+LY++Y+S +
Sbjct: 689 VPQGSILGPVLYSIYSSDM 707
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIK--YNNVFHGPKLAF 263
VFLD+ A+D V L+ L + P L + + R+ +K ++
Sbjct: 510 VFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIG- 567
Query: 262 KGLMQGSSLSPILYNLYTSQI 200
G+ QGS+L PILY++++S +
Sbjct: 568 AGVPQGSNLGPILYSIFSSDM 588
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIK--YNNVFHGPKLAF 263
VFLD+ A+D V L+ L + P L + + R+ +K ++
Sbjct: 626 VFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIG- 683
Query: 262 KGLMQGSSLSPILYNLYTSQI 200
G+ QGS+L PILY++++S +
Sbjct: 684 AGVPQGSNLGPILYSIFSSDM 704
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIK--YNNVFHGPKLAF 263
VFLD+ A+D V L+ L + P L + + R+ +K ++
Sbjct: 626 VFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIG- 683
Query: 262 KGLMQGSSLSPILYNLYTSQI 200
G+ QGS+L PILY++++S +
Sbjct: 684 AGVPQGSNLGPILYSIFSSDM 704
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIK--YNNVFHGPKLAF 263
VFLD+ A+D V L+ L + P L + + R+ +K ++
Sbjct: 588 VFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIG- 645
Query: 262 KGLMQGSSLSPILYNLYTSQI 200
G+ QGS+L PILY++++S +
Sbjct: 646 AGVPQGSNLGPILYSIFSSDM 666
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIK--YNNVFHGPKLAF 263
VFLD+ A+D V L+ L + P L + + R+ +K ++
Sbjct: 626 VFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIG- 683
Query: 262 KGLMQGSSLSPILYNLYTSQI 200
G+ QGS+L PILY++++S +
Sbjct: 684 AGVPQGSNLGPILYSIFSSDM 704
>AY220741-1|AAO74886.1| 471|Drosophila melanogaster putative ETH
receptor splicingvariant a protein.
Length = 471
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 256 LMQGSSLSPILYNLYTSQIYRHVTELWRK*GRLIPPLLEL 137
L S+++PILYNL +++ R L + GRL+ L+ L
Sbjct: 283 LYLNSAMNPILYNLMSTKFRRGFKRLCQDAGRLLLELVTL 322
>AF505863-1|AAO20966.1| 471|Drosophila melanogaster G-protein
coupled receptor protein.
Length = 471
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 256 LMQGSSLSPILYNLYTSQIYRHVTELWRK*GRLIPPLLEL 137
L S+++PILYNL +++ R L + GRL+ L+ L
Sbjct: 283 LYLNSAMNPILYNLMSTKFRRGFKRLCQDAGRLLLELVTL 322
>AE014297-2964|AAF55872.2| 471|Drosophila melanogaster CG5911-PA,
isoform A protein.
Length = 471
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 256 LMQGSSLSPILYNLYTSQIYRHVTELWRK*GRLIPPLLEL 137
L S+++PILYNL +++ R L + GRL+ L+ L
Sbjct: 283 LYLNSAMNPILYNLMSTKFRRGFKRLCQDAGRLLLELVTL 322
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIK--YNNVFHGPKLAF 263
VFLD+ A+D V L+ L + P L + + R+ +K ++
Sbjct: 626 VFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIG- 683
Query: 262 KGLMQGSSLSPILYNLYTSQI 200
G+ QGS+L P+LY++++S +
Sbjct: 684 AGVPQGSNLGPLLYSIFSSDM 704
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = -2
Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIK--YNNVFHGPKLAF 263
VFLD+ A+D V L+ L + P L + + R+ +K ++
Sbjct: 638 VFLDISEAFDRVWHEGLLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIG- 695
Query: 262 KGLMQGSSLSPILYNLYTSQI 200
G+ QGS+L P+LY++++S +
Sbjct: 696 AGVPQGSNLGPLLYSIFSSDM 716
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,057,726
Number of Sequences: 53049
Number of extensions: 568466
Number of successful extensions: 1147
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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