Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c07f
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    48   5e-06
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    36   0.016
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    30   1.0  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    30   1.0  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p...    29   2.4  
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL009246-7|CAA15840.2|  347|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    27   9.5  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    27   9.5  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    27   9.5  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 27/95 (28%), Positives = 43/95 (45%)
 Frame = -2

Query: 484 LTDMKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLY 305
           + D  K +  G     ++LD   A+D +    L+  L SL     LL W+      RS  
Sbjct: 1   MNDWTKSIDHGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFR 60

Query: 304 IKYNNVFHGPKLAFKGLMQGSSLSPILYNLYTSQI 200
           ++        K A  G+ QG+ LSP+L+ +Y + I
Sbjct: 61  VRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDI 95


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -2

Query: 445 AICVFLDVQGAYDNVDLHQLIR-VLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKL 269
           AI   LD++ A+D V   +L   ++ + G   K+  W+ N    R +   ++N +     
Sbjct: 469 AIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHT 528

Query: 268 AFKGLMQGSSLSPILYNLY 212
              G+ QGS +SP L+  Y
Sbjct: 529 LLGGVPQGSVISPNLFTFY 547


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = -2

Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLA--F 263
           VF+D + A+D+V+   + + L   G  G  +  +   Y  ++    +   FH P      
Sbjct: 689 VFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECY--KNCTTNFTP-FHRPVAVPVT 745

Query: 262 KGLMQGSSLSPILYNLYTSQIYRHVT 185
           KG+ QG  +SP L++     ++R ++
Sbjct: 746 KGVRQGDPISPNLFSACLEHVFRKLS 771


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = -2

Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLA--F 263
           VF+D + A+D+V+   + + L   G  G  +  +   Y  ++    +   FH P      
Sbjct: 428 VFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECY--KNCTTNFTP-FHRPVAVPVT 484

Query: 262 KGLMQGSSLSPILYNLYTSQIYRHVT 185
           KG+ QG  +SP L++     ++R ++
Sbjct: 485 KGVRQGDPISPNLFSACLEHVFRKLS 510


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = -2

Query: 436 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLA--F 263
           VF+D + A+D V+   + + L   G  G  +  +   Y  ++    +   FH P      
Sbjct: 518 VFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLKECY--KNCTTNFTP-FHRPVAVPVT 574

Query: 262 KGLMQGSSLSPILYNLYTSQIYRHVT 185
           KG+ QG  +SP L++     ++R ++
Sbjct: 575 KGVRQGDPISPNLFSACLEHVFRKLS 600


>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 141 SCPTFKFQRLILVTDIMKLMDFDENNQTKHGNSLANN 31
           SC  F+++ +  V  I  L+D + N Q KHG SL+ N
Sbjct: 653 SCFQFRYRGMKGVLAIDPLLDKERNWQEKHGISLSKN 689


>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 141 SCPTFKFQRLILVTDIMKLMDFDENNQTKHGNSLANN 31
           SC  F+++ +  V  I  L+D + N Q KHG SL+ N
Sbjct: 653 SCFQFRYRGMKGVLAIDPLLDKERNWQEKHGISLSKN 689


>AL009246-7|CAA15840.2|  347|Caenorhabditis elegans Hypothetical
           protein C47F8.8 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 502 FKICTFLTDMKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFP 356
           ++ CT L DM+  +  G   + + + VQ  Y     H+++R+ Y +G P
Sbjct: 304 YENCTELADMEIAIRIGDITLQI-VTVQNTY-----HEMVRLYYQIGMP 346


>Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical
           protein R05D11.9 protein.
          Length = 640

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 15  KLILSGYLLKNFHV*FDYSHQNPSI 89
           KL+L  YLLK FHV   +S  +P +
Sbjct: 214 KLLLIRYLLKQFHVFCQFSTGDPEV 238


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 333 SICILVVLYTLNTIMFFMVQN 271
           S+C+ +V++T+NTI F+   N
Sbjct: 58  SLCMALVVFTMNTITFYSQNN 78


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 333 SICILVVLYTLNTIMFFMVQN 271
           S+C+ +V++T+NTI F+   N
Sbjct: 58  SLCMALVVFTMNTITFYSQNN 78


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 333 SICILVVLYTLNTIMFFMVQN 271
           S+C+ +V++T+NTI F+   N
Sbjct: 58  SLCMALVVFTMNTITFYSQNN 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,823,596
Number of Sequences: 27780
Number of extensions: 307230
Number of successful extensions: 634
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)