Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c05r
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...   196   3e-51
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    85   1e-17
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   6.5  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  196 bits (478), Expect = 3e-51
 Identities = 93/149 (62%), Positives = 116/149 (77%), Gaps = 4/149 (2%)
 Frame = -2

Query: 743 IWIESGIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTP 564
           IW+E     H+ SR+E+M+KAK+QFK+R  ANNV+IIIPVP DADSP+F+T+ G V+Y P
Sbjct: 277 IWVECESIVHSGSRIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAP 336

Query: 563 EQNAITWSIKSFPGGKEYLMRAHFGLPSVECE--EVDGKPPIQVKFEIPYFTTSGIQVRY 390
           EQ A+ W+IK F GGKE+ MRA  GLPSV+ E  +V  K P+Q+KF IPYFTTSGIQVRY
Sbjct: 337 EQAAMVWNIKKFAGGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRY 396

Query: 389 LKIIE-KSGYQALPWVRYITQNG-DYQLR 309
           LKI E K  Y A+PWVRY+TQNG +Y +R
Sbjct: 397 LKITEPKLNYHAMPWVRYVTQNGTEYSIR 425


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 42/141 (29%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
 Frame = -2

Query: 725 IERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAIT 546
           +E+ +  ++ Y I  ++ +  +  ++++   IPVP +      +   G   Y P +N I 
Sbjct: 306 VEQLSKQKIIYRISIRADYPHK-LSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIIN 364

Query: 545 WSIKSFPGGKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSG 366
           W I  F G  E +  A   L +   +++  KPPI + F I  FT+SG+ V+YL++ E S 
Sbjct: 365 WKIPRFLGETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQYLRVSEPSN 424

Query: 365 --YQALPWVRYITQNGDYQLR 309
             Y+++ WVRY T+ G  ++R
Sbjct: 425 SKYKSIKWVRYSTRAGTCEIR 445


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 607 HQNSRQQLVALNIHQNKMRSHGQSNHFQEA 518
           +Q + QQL  L+I++ K RSH  S+  +E+
Sbjct: 62  YQRTLQQLNTLSIYELKNRSHFSSSPVEES 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,851
Number of Sequences: 5004
Number of extensions: 56121
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)