Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c05r
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 217 8e-57
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 208 3e-54
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 119 2e-27
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 50 2e-06
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 32 0.55
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 31 1.3
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 30 1.7
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 30 2.2
08_02_0635 + 19551869-19551996,19553131-19553233 29 2.9
01_07_0202 + 41964448-41965104 28 6.8
04_04_1223 + 31851545-31852609,31854314-31854773,31856201-318562... 28 9.0
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 217 bits (530), Expect = 8e-57
Identities = 96/147 (65%), Positives = 120/147 (81%), Gaps = 2/147 (1%)
Frame = -2
Query: 743 IWIESGIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTP 564
IW+E+ IE+H+ SR+E M+KA+SQFK RSTA NVEI +PVP+DA +P +T++GS Y P
Sbjct: 281 IWVEAQIEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAP 340
Query: 563 EQNAITWSIKSFPGGKEYLMRAHFGLPSVECEEV--DGKPPIQVKFEIPYFTTSGIQVRY 390
E++A+ W +KSFPGGK+Y+ RA F LPS+ EE + K PI+VKFEIPYFT SGIQVRY
Sbjct: 341 ERDAMVWKVKSFPGGKDYMCRAEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRY 400
Query: 389 LKIIEKSGYQALPWVRYITQNGDYQLR 309
LKIIEKSGYQALPWVRYIT G+Y+LR
Sbjct: 401 LKIIEKSGYQALPWVRYITMAGEYELR 427
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 208 bits (509), Expect = 3e-54
Identities = 92/147 (62%), Positives = 117/147 (79%), Gaps = 2/147 (1%)
Frame = -2
Query: 743 IWIESGIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTP 564
IW+E+ +E+H+ SR++ +K +SQFK RSTA NVEI +PVP D+ +P +T++GS Y P
Sbjct: 256 IWVEAQVEKHSRSRIQITVKTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAP 315
Query: 563 EQNAITWSIKSFPGGKEYLMRAHFGLPSVECEE--VDGKPPIQVKFEIPYFTTSGIQVRY 390
E++A+ W IKSFPGGKEY+ RA F LPS+ E+ + K PI+VKFEIPYFT SGIQVRY
Sbjct: 316 ERDAMVWKIKSFPGGKEYMCRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRY 375
Query: 389 LKIIEKSGYQALPWVRYITQNGDYQLR 309
LKIIEKSGYQALPWVRYIT G+Y+LR
Sbjct: 376 LKIIEKSGYQALPWVRYITMAGEYELR 402
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 119 bits (287), Expect = 2e-27
Identities = 57/140 (40%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
Frame = -2
Query: 725 IERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAIT 546
I+ +R+E +K KS F + A V + +PVP F+TT G KY +++
Sbjct: 298 IKELGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLV 357
Query: 545 WSIKSFPGGKEYLMRAHFGLPSVECEEVD-GKPPIQVKFEIPYFTTSGIQVRYLKIIEKS 369
W I+ FPG E M A L S E+ +PPIQ++F++P FT SG++VR+LK+ EKS
Sbjct: 358 WKIRKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWEKS 417
Query: 368 GYQALPWVRYITQNGDYQLR 309
GY + WVRYIT+ G Y++R
Sbjct: 418 GYNTVEWVRYITRAGSYEIR 437
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -2
Query: 449 PIQVKFEIPYFTTSGIQVRYLKIIEKS-GYQALPWVRYITQNGDYQLR 309
P+ + F IP + TS +QVRYL+I +KS Y WVRY+TQ Y R
Sbjct: 371 PVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVAR 418
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 650 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 537
+NV I IP+PA ++P + G KY + + WSI
Sbjct: 702 HNVVISIPLPALREAPSVRQIDGEWKYDSRNSVLEWSI 739
>05_03_0443 +
14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 650 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 537
+NV I IP+PA ++P + G +Y + + WSI
Sbjct: 528 HNVVISIPLPALREAPSVRQIDGEWRYDSRNSVLEWSI 565
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 650 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 537
++V I IP+PA ++P+ + G KY + + WSI
Sbjct: 568 HSVIISIPLPALREAPRVRQIDGEWKYDSRNSVLEWSI 605
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 650 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 537
+NV I IP+PA ++P + G +Y + + WSI
Sbjct: 442 HNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSI 479
>08_02_0635 + 19551869-19551996,19553131-19553233
Length = 76
Score = 29.5 bits (63), Expect = 2.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 284 WSFNRNCISHKNFIYAKIVI 225
WSFN+ C+ NFI+ +++I
Sbjct: 42 WSFNKICLQRTNFIHLQLII 61
>01_07_0202 + 41964448-41965104
Length = 218
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 541 DHVIAFCSGVYLTLPIVVLNFGESASAG 624
DHV+ Y+ LPI V++ GE AG
Sbjct: 51 DHVVCAADSFYVGLPIPVVSAGEELMAG 78
>04_04_1223 +
31851545-31852609,31854314-31854773,31856201-31856250,
31856333-31856463,31856569-31856665,31856759-31856950,
31857121-31857123
Length = 665
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 521 GKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALP 351
GKE L+RA + L S+ + P YFT + LK +EKS + P
Sbjct: 78 GKERLVRAKYSL-SLVARDGRASPLAGDTLRSHYFTPTSRSADVLKFVEKSNLSSSP 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,525,180
Number of Sequences: 37544
Number of extensions: 311725
Number of successful extensions: 546
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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