Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c05r
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 265 2e-71
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 263 8e-71
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 252 2e-67
Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical pr... 109 3e-24
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 86 2e-17
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 86 2e-17
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 86 2e-17
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 47 2e-05
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 35 0.070
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z70271-1|CAB61041.1| 393|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF103732-1|AAD03603.1| 393|Caenorhabditis elegans Wnt homolog p... 28 6.1
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 265 bits (650), Expect = 2e-71
Identities = 119/145 (82%), Positives = 135/145 (93%)
Frame = -2
Query: 743 IWIESGIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTP 564
IWIE+ IERH+HSRV ++IKAKSQFKRRSTANNVEIIIPVP+DADSPKFKT+IGSVKYTP
Sbjct: 276 IWIETSIERHSHSRVSFIIKAKSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTP 335
Query: 563 EQNAITWSIKSFPGGKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLK 384
EQ+A W+IK+FPGGKEYL+ AH LPSV EE +G+PPI+VKFEIPYFTTSGIQVRYLK
Sbjct: 336 EQSAFVWTIKNFPGGKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSGIQVRYLK 395
Query: 383 IIEKSGYQALPWVRYITQNGDYQLR 309
IIEKSGYQALPWVRYITQNG+Y++R
Sbjct: 396 IIEKSGYQALPWVRYITQNGEYEMR 420
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 263 bits (645), Expect = 8e-71
Identities = 118/145 (81%), Positives = 134/145 (92%)
Frame = -2
Query: 743 IWIESGIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTP 564
IWIE+ IERH+HSRV ++IKAKSQFKRRSTANNVEIIIPVP+DADSPKFKT+IGSVKYTP
Sbjct: 276 IWIETSIERHSHSRVSFIIKAKSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTP 335
Query: 563 EQNAITWSIKSFPGGKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLK 384
EQ+A W+IK+FPGGKEYL+ AH LPSV EE +G+PPI+VKFEIPYFTTSGIQVRYLK
Sbjct: 336 EQSAFVWTIKNFPGGKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSGIQVRYLK 395
Query: 383 IIEKSGYQALPWVRYITQNGDYQLR 309
IIEK GYQALPWVRYITQNG+Y++R
Sbjct: 396 IIEKRGYQALPWVRYITQNGEYEMR 420
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 252 bits (617), Expect = 2e-67
Identities = 108/145 (74%), Positives = 130/145 (89%)
Frame = -2
Query: 743 IWIESGIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTP 564
IW+E+ +ERHAHSRVEYM+KAKSQFKR+S AN+VE+IIPVP+D +PKFKT G+ KY P
Sbjct: 280 IWVEAAVERHAHSRVEYMVKAKSQFKRQSVANHVEVIIPVPSDVSAPKFKTGAGTAKYVP 339
Query: 563 EQNAITWSIKSFPGGKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLK 384
E NAI WSI+SFPGG+EY+MR+ F LPS+ EE++G+PPI VKFEIPY+TTSG+QVRYLK
Sbjct: 340 ELNAIVWSIRSFPGGREYIMRSSFMLPSIGSEELEGRPPINVKFEIPYYTTSGLQVRYLK 399
Query: 383 IIEKSGYQALPWVRYITQNGDYQLR 309
IIEKSGYQALPWVRY+TQNGDYQ+R
Sbjct: 400 IIEKSGYQALPWVRYVTQNGDYQMR 424
>Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical
protein K11D2.3b protein.
Length = 58
Score = 109 bits (261), Expect = 3e-24
Identities = 47/54 (87%), Positives = 53/54 (98%)
Frame = -2
Query: 470 EEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 309
EE +G+PPI+VKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNG+Y++R
Sbjct: 3 EESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYEMR 56
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 86.2 bits (204), Expect = 2e-17
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Frame = -2
Query: 713 AHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIK 534
+ +++E + KS FK A +E+ IP P + + G KY +NAI W IK
Sbjct: 301 SRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIK 360
Query: 533 SFPGGKEYLMRAHFGLPSVECEEVD--GKPPIQVKFEIPYFTTSGIQVRYLKIIEK---- 372
G KE + A L S E +PP+ + FE+P F SG++VRYLK+ E
Sbjct: 361 RMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVP-FAPSGLKVRYLKVFEPKLNY 419
Query: 371 SGYQALPWVRYITQNGDYQLR 309
S + + WVRYI ++G Y+ R
Sbjct: 420 SDHDVIKWVRYIGRSGLYETR 440
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 86.2 bits (204), Expect = 2e-17
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Frame = -2
Query: 713 AHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIK 534
+ +++E + KS FK A +E+ IP P + + G KY +NAI W IK
Sbjct: 295 SRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIK 354
Query: 533 SFPGGKEYLMRAHFGLPSVECEEVD--GKPPIQVKFEIPYFTTSGIQVRYLKIIEK---- 372
G KE + A L S E +PP+ + FE+P F SG++VRYLK+ E
Sbjct: 355 RMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVP-FAPSGLKVRYLKVFEPKLNY 413
Query: 371 SGYQALPWVRYITQNGDYQLR 309
S + + WVRYI ++G Y+ R
Sbjct: 414 SDHDVIKWVRYIGRSGLYETR 434
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 86.2 bits (204), Expect = 2e-17
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Frame = -2
Query: 713 AHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIK 534
+ +++E + KS FK A +E+ IP P + + G KY +NAI W IK
Sbjct: 301 SRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIK 360
Query: 533 SFPGGKEYLMRAHFGLPSVECEEVD--GKPPIQVKFEIPYFTTSGIQVRYLKIIEK---- 372
G KE + A L S E +PP+ + FE+P F SG++VRYLK+ E
Sbjct: 361 RMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVP-FAPSGLKVRYLKVFEPKLNY 419
Query: 371 SGYQALPWVRYITQNGDYQLR 309
S + + WVRYI ++G Y+ R
Sbjct: 420 SDHDVIKWVRYIGRSGLYETR 440
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/114 (26%), Positives = 53/114 (46%)
Frame = -2
Query: 647 NVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVECE 468
+V + I +P + + G + + P + W+I GK ++ G +V
Sbjct: 305 DVVLEITMPKCVQNCNLVASHGRIAFDPTTKLLQWTIGKIEVGKPSTLK---GSVAVSGT 361
Query: 467 EVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRT 306
V PPI +KF+I SG++V L + + Y+ V+YIT+ G + +RT
Sbjct: 362 TVAENPPISLKFKINQLVLSGLKVNRLDMYGEK-YKPFKGVKYITKAGKFTIRT 414
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 34.7 bits (76), Expect = 0.070
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -2
Query: 656 TANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSV 477
T NNV II+P+P A +P G +Y +N I WS+ F +P+
Sbjct: 408 TLNNVRIIVPLPT-ATAPSVGECDGEYEYHKTKNVIVWSLAVIDSSNS-SGTLEFSVPNG 465
Query: 476 ECE 468
C+
Sbjct: 466 HCD 468
>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
C13F10.4 protein.
Length = 2076
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 119 IMLTLKKLSCRAPLDVICTFQFQFNKIIYFNHRYL 15
IM+T + AP+DV+ Q FNK+I R+L
Sbjct: 1851 IMVTAVVFTTSAPVDVVLGHQESFNKLIVLLKRHL 1885
>Z70271-1|CAB61041.1| 393|Caenorhabditis elegans Hypothetical
protein W08D2.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = -2
Query: 581 SVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVE-----CEEVDGKPPIQ 441
S Y+ +Q W +F G +YL R H+ E C +DG P Q
Sbjct: 23 SATYSTQQVPYNWLTLAFVGSNDYLPRPHYHSTDREHFKELCRRLDGLNPNQ 74
>AF103732-1|AAD03603.1| 393|Caenorhabditis elegans Wnt homolog
protein.
Length = 393
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = -2
Query: 581 SVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVE-----CEEVDGKPPIQ 441
S Y+ +Q W +F G +YL R H+ E C +DG P Q
Sbjct: 23 SATYSTQQVPYNWLTLAFVGSNDYLPRPHYHSTDREHFKELCRRLDGLNPNQ 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,502
Number of Sequences: 27780
Number of extensions: 307033
Number of successful extensions: 737
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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