Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c05f
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 180 1e-46
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 94 2e-20
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 53 3e-08
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 41 1e-04
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 40 2e-04
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 29 0.50
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 27 2.0
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 4.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 4.7
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ... 25 6.2
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 25 6.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.2
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 8.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 8.2
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 180 bits (438), Expect = 1e-46
Identities = 81/157 (51%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
Frame = +3
Query: 120 SSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEE-GMLTPLLQTSECTFAYIK 296
+SAI++L++KGKV+ISR+YR D+ + V++KF+PL E EEE G TP L + YI
Sbjct: 2 ASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIH 61
Query: 297 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 476
N++Y+++ +K N++ + VFL K+ +V +YFKEL+EESIRDNFV++YELLDE++DFG
Sbjct: 62 HNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFG 121
Query: 477 YPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSW 587
+PQTT++KILQEYITQ + ++ P+A+TNA+SW
Sbjct: 122 FPQTTETKILQEYITQTSNTVKKHAPPPIAMTNAISW 158
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 93.9 bits (223), Expect = 2e-20
Identities = 44/133 (33%), Positives = 77/133 (57%)
Frame = +3
Query: 123 SAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTN 302
S ++I ++KG LI + +R D+ V + F ++ + P++ T+ Y K
Sbjct: 3 SGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAILTNTD--YRHPIVSIGSSTYIYTKHE 60
Query: 303 NLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYP 482
+LY+V+ TK N N+ +V FL +++ +T YF +L E +++DN I+ELLDE+ID+G
Sbjct: 61 DLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGII 120
Query: 483 QTTDSKILQEYIT 521
QTT+ L ++
Sbjct: 121 QTTEPDALARSVS 133
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 53.2 bits (122), Expect = 3e-08
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Frame = +3
Query: 126 AIYILDVKGKVLISRNYRGDVDLGV---IDKFMPLLMEKEEEGMLTPLLQTSECTFAYIK 296
A+ I++ GK +ISR +R + V + F L+ EK + +++ F Y
Sbjct: 5 AVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQN----TTVESDNVRFVYQP 60
Query: 297 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 476
+ LYIV T +NI L+ + +V+T LEE I + I+ DE G
Sbjct: 61 LDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLG 120
Query: 477 YPQTTDSKILQEYITQEGHKLEMQ 548
Y ++ Y+ E H+ ++Q
Sbjct: 121 YRDNVSLTQIKTYLEMESHEEKIQ 144
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 41.1 bits (92), Expect = 1e-04
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Frame = +3
Query: 126 AIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSE--CTFAYIKT 299
AIY++D G +L+ RG ++ L + P + ++ F ++
Sbjct: 6 AIYLVDTNGALLLQLESRGRTSPITLEHIKNELFRYKLRNEEPPFILHNKNFLIFQELEE 65
Query: 300 NNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGY 479
+ + TT + + + +IV+V+ +F + N VI +LL E+ID+GY
Sbjct: 66 DVRLCIPTTCDTEPL-YIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGY 124
Query: 480 PQTTDSKILQEYI 518
+ LQ+ +
Sbjct: 125 ATCMEPNALQDIV 137
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 40.3 bits (90), Expect = 2e-04
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = -2
Query: 415 SSSNSLKYSVITSTILYKNTNTSAILAFFFVVDTMYKLLVLI*ANVHSLVCNKGVNIPSS 236
S S ++ T TI T+TS+I+ + V+T+Y+ + + + S++ N I S
Sbjct: 336 SLSTEVEVEYFTKTI----TDTSSIVTYSTGVETLYETETITSSEISSIIYNFSTPISGS 391
Query: 235 SFSIS-KGMNLSITPRSTSPR*FLEMRTLPLTSSMYIAEEDMVKQFLKLYFRLILHFTIV 59
SF K +N + P TS + TLP +S M V + F +I FT
Sbjct: 392 SFPDGFKPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTSS 451
Query: 58 Y 56
Y
Sbjct: 452 Y 452
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 29.1 bits (62), Expect = 0.50
Identities = 20/99 (20%), Positives = 39/99 (39%)
Frame = +3
Query: 222 LMEKEEEGMLTPLLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFK 401
L+ + + L+ Y + LY N + ++ VE++ +F
Sbjct: 38 LISQRNQKFQANFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFG 97
Query: 402 ELEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYI 518
+ E + NF + +LDE+I G ++ K + E I
Sbjct: 98 NVCELDLIFNFYKVSAILDEIILGGEIGESNKKSVLERI 136
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 255 PLLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIV 377
P+L TS F I+ +Y+ +A FVFLYK++
Sbjct: 342 PILFTSVYHFTIIENGLVYLGILVGALITLACYFVFLYKVM 382
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 418 LSSSNSLKYSVITSTILYKNTNT-SAILAFFFVVDTMYKLLVL 293
++ SN Y +I + KNT +A+++FF + T YK L L
Sbjct: 794 INFSNCFTYWIINCILEKKNTKARTAVISFF--IQTAYKCLSL 834
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 411 EESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLE 542
E SI VV ELL+ L ++ DS + Y+T G L+
Sbjct: 66 ETSIMKLLVVTKELLESLTNWSKGTVNDSAVSSVYVTLIGEFLQ 109
>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 400
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 426 DNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEMQ 548
DN + +++ L E+ G + S L+ Y+ +G +E+Q
Sbjct: 59 DNLISLHKSLVEIESLGGNEVNVSDFLKSYLESKGLTVELQ 99
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 256 GVNIPSSSFSISKGMNLSITPRSTSPR*FLEM 161
G I S+ FS+ + + L+ RS SPR FLE+
Sbjct: 119 GGKITSAFFSLLQSVLLNHGQRSISPRNFLEI 150
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 401 FEVLSHNFNNFVQEYKHKCNISIF 330
FE L+ NF+NFV+ +++ N+ F
Sbjct: 4269 FEKLTFNFSNFVKYRQYQINLKDF 4292
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 8.2
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 237 EEGMLTPLLQTS----ECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKE 404
E LT LL+ S E T ++ ++ +N+ L +I+E + E +
Sbjct: 471 ERTFLTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRS 530
Query: 405 LEEESIRDN 431
LEEESI+++
Sbjct: 531 LEEESIKES 539
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +3
Query: 75 KINLKYSLRNCFTMSSSAIYILDVKGKVLISRNYRGDV 188
++ L+ ++++C TM +Y L+V+ + + + GDV
Sbjct: 86 QMELETAVKSCMTMEQLELYSLNVRLEEITQKLRTGDV 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,194
Number of Sequences: 5004
Number of extensions: 51114
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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