Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c05f
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 167 6e-42
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 146 1e-35
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 133 1e-31
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 100 2e-21
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 70 1e-12
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 48 7e-06
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 33 0.13
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 32 0.30
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 32 0.39
05_04_0359 + 20615362-20615549,20615701-20615767,20616126-206161... 31 0.52
12_01_0662 + 5601147-5601176,5601419-5601517,5601601-5601651,560... 30 1.6
02_02_0351 + 9257204-9261388 29 2.1
02_05_0376 + 28406547-28406870 29 2.7
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727... 29 2.7
01_06_1571 - 38314952-38315089,38315958-38315987,38316107-383162... 29 3.6
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 29 3.6
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 167 bits (406), Expect = 6e-42
Identities = 73/157 (46%), Positives = 120/157 (76%), Gaps = 2/157 (1%)
Frame = +3
Query: 123 SAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGML-TPLL-QTSECTFAYIK 296
SA+++LD+KG+VL+ R+YRGDV ++F L++KE + +P++ + T+ +I+
Sbjct: 6 SALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVTYMFIQ 65
Query: 297 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 476
NN+++++ +++N N A + +FL+++V+V YF+ELEEES+RDNFVV+YELLDE++DFG
Sbjct: 66 HNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFG 125
Query: 477 YPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSW 587
YPQ T++KIL E+I + +++E+ + PMAVTNAVSW
Sbjct: 126 YPQYTEAKILSEFIKTDAYRMEVSQRPPMAVTNAVSW 162
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 146 bits (354), Expect = 1e-35
Identities = 62/143 (43%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
Frame = +3
Query: 123 SAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEG-MLTPLLQTSE-CTFAYIK 296
SA+++LD+KG+VL+ R+YRGDV ++F L++KE + +L+P++ ++ +I+
Sbjct: 7 SALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGVSYMFIQ 66
Query: 297 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 476
NN+++++ +++N N A + +FL+++V+V YF+ELEEES+RDNFVV+YELLDE++DFG
Sbjct: 67 HNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFG 126
Query: 477 YPQTTDSKILQEYITQEGHKLEM 545
YPQ T++ IL E+I + +++E+
Sbjct: 127 YPQYTEAMILSEFIKTDAYRMEV 149
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 133 bits (321), Expect = 1e-31
Identities = 72/167 (43%), Positives = 105/167 (62%), Gaps = 9/167 (5%)
Frame = +3
Query: 114 MSSSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYI 293
+++SAIY L+++G VLI+R YR DV ++D F +M+ +E G P+ Q C+F Y+
Sbjct: 3 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTC-PVRQIGGCSFLYM 61
Query: 294 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFK-ELEEESIRDNFVVIYELLDELID 470
+ +N+YIV NAN+A F F+ + V + YF +E++IR+NFV+IYELLDE++D
Sbjct: 62 RISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMD 121
Query: 471 FGYPQTTDSKILQEYITQEGHKLEMQPK-----IPMA---VTNAVSW 587
FGYPQ +IL+ YITQEG + K +P A VT AV W
Sbjct: 122 FGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGW 168
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 99.5 bits (237), Expect = 2e-21
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Frame = +3
Query: 123 SAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLM--EKEEEGMLTPLLQTSECTFAYIK 296
S ++L +G ++ R+YRG+V G + F + +E P+ + ++K
Sbjct: 3 SQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIHVK 62
Query: 297 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 476
L+ V TT N + +L+ L +I V +Y L E+S+R NF+++YELLDE+IDFG
Sbjct: 63 VAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEVIDFG 122
Query: 477 YPQTTDSKILQEYITQE 527
YPQTT +++L+ YI E
Sbjct: 123 YPQTTSTEVLKSYIFNE 139
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/85 (36%), Positives = 53/85 (62%)
Frame = +3
Query: 333 NANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQE 512
+ N+ F FL ++ +V+T+Y +L E+ I+DNFV++Y++LDE++D G+P TT+ IL+E
Sbjct: 91 SVNMICDFQFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEMMDNGFPLTTEPNILKE 150
Query: 513 YITQEGHKLEMQPKIPMAVTNAVSW 587
I +M + A + V W
Sbjct: 151 MIAPPNIVSKMLNVVTDAAASFVPW 175
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 47.6 bits (108), Expect = 7e-06
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Frame = +3
Query: 93 SLRNCFTMSSSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTS 272
S + M A I+ GK L+SR + D+ I+ + + G ++T
Sbjct: 279 STKKALKMVVLAASIISKSGKALVSRQFV-DMSRIRIEGLLAAFPKLVGTGKQHTYVETE 337
Query: 273 ECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYEL 452
+ Y LY++ T K +NI L + +++ EY L+EE + +
Sbjct: 338 NVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFA 397
Query: 453 LDELIDFGYPQTTDSKILQEYITQE-----GHKLEMQPKI 557
DE I G + + +++Y E HKL MQ KI
Sbjct: 398 FDEAISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKI 437
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +3
Query: 93 SLRNCFTMSSSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTS 272
++ +C + + IY+L+ K++ N R VD+GVI K + ++M + +GM T + +
Sbjct: 1177 AILSCVLVINEIIYMLNGCIKIM-QPNDRDLVDVGVISKLLSMIMTIKSDGMFTSIHKLC 1235
Query: 273 ECTF 284
+ F
Sbjct: 1236 DSIF 1239
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +3
Query: 372 IVEVMTEYFKELEEESIRDNFVVIY---ELLDELIDFGYPQTTDSKILQEYITQEG 530
++ +TE+FKE +E+ D+ + + ++ D L++F S+ L E+ T+EG
Sbjct: 246 VLSFITEFFKEYLKENTLDDLIALLKKGKMEDNLLEFFPSAKRTSEALSEHFTKEG 301
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 31.9 bits (69), Expect = 0.39
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = +3
Query: 288 YIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELI 467
Y + +LY N V ++ VEV+ YF + E + NF Y +LDE++
Sbjct: 170 YRRYASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEIL 229
Query: 468 DFGYPQTTDSKILQEYITQE 527
G Q + K + I +
Sbjct: 230 IAGELQESSKKNVARLIAAQ 249
>05_04_0359 +
20615362-20615549,20615701-20615767,20616126-20616191,
20616319-20616348,20616461-20616505,20617020-20617286
Length = 220
Score = 31.5 bits (68), Expect = 0.52
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +3
Query: 435 VVIYELLDELIDFGYPQTTDSKILQEYITQEGHKL---EMQPKIPMAVTNAVS 584
VVI+ +L D+ P+TT S+IL++Y T G L + +PK +A+ A++
Sbjct: 45 VVIFSSAGKLSDYCTPKTTLSRILEKYQTNSGKILWDEKHKPKELIAIEEALN 97
>12_01_0662 +
5601147-5601176,5601419-5601517,5601601-5601651,
5602822-5602995,5603869-5603928,5604759-5604800
Length = 151
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 363 LYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLE 542
++ VE++ +F + E + NF +Y +LDE I G Q T + + E + E KLE
Sbjct: 93 IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERM-GELEKLE 151
>02_02_0351 + 9257204-9261388
Length = 1394
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 93 SLRNCFTMSSSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTS 272
S+ C +S +L ++ LIS YRG + +DK + +E+ LT L + S
Sbjct: 977 SMLTCVIVSERKTDLLRLQENKLISHGYRGALVFDNLDKVEDMSIEEMPHVSLTDLQKLS 1036
Query: 273 ECTFAYIK 296
T +K
Sbjct: 1037 SLTRLAVK 1044
>02_05_0376 + 28406547-28406870
Length = 107
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 228 PSVKA*ICRSHPDQHHHGNFSK 163
PS KA ICR+ P HHHG S+
Sbjct: 6 PSCKATICRT-PGNHHHGTTSE 26
>01_06_1282 +
35972234-35972244,35972451-35972522,35972714-35972747,
35973247-35973360,35974833-35975036,35975290-35975449,
35976093-35976240,35976345-35976422,35976854-35976938,
35977142-35977213
Length = 325
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 426 DNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLE 542
+N +I+ LDE++D G TD+K + E ++ GH LE
Sbjct: 258 ENLDLIFLCLDEVVDGGIVLETDAKAILEKVS--GHGLE 294
>01_06_1571 -
38314952-38315089,38315958-38315987,38316107-38316206,
38316322-38316383,38316465-38316531,38316889-38317076
Length = 194
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 435 VVIYELLDELIDFGYPQTTDSKILQEYITQEG 530
VVI+ +L D+ P+T+ S+IL++Y T G
Sbjct: 45 VVIFSSAGKLYDYCSPKTSLSRILEKYQTNSG 76
>01_06_1513 - 37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 21 PKSETYVCHKIM*TIVKCKINLKYSLRNCFTMSSSAIYILDVKGKVLISRNYRGDVDLGV 200
PK+ + + I+ +NL S + + ++ +++LD + V + Y D+DL +
Sbjct: 1244 PKTHSTMFLNILMAQSALSVNLSDSFHSSVMLENALVHLLDGRHVVEANDEYSNDLDLDI 1303
Query: 201 IDKF 212
KF
Sbjct: 1304 KPKF 1307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,597,022
Number of Sequences: 37544
Number of extensions: 281296
Number of successful extensions: 562
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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