Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c05f
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 226 8e-60
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 226 8e-60
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 217 5e-57
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 131 3e-31
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 127 5e-30
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 126 9e-30
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 83 1e-16
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 58 5e-09
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 39 0.002
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 34 0.065
Z36949-2|CAA85416.1| 184|Caenorhabditis elegans Hypothetical pr... 33 0.20
AF077533-2|AAP40529.1| 972|Caenorhabditis elegans Hypothetical ... 31 0.80
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ... 31 0.80
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 31 0.80
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 30 1.4
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 30 1.4
U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone... 29 3.2
AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear recep... 29 3.2
AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear recep... 29 3.2
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 28 5.7
Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical pr... 27 9.9
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 27 9.9
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 27 9.9
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 226 bits (553), Expect = 8e-60
Identities = 101/158 (63%), Positives = 129/158 (81%)
Frame = +3
Query: 114 MSSSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYI 293
M++SA++ILD+KGK +ISRNYRGD+D+ IDKF+ LLMEKEEEG P+L + F +I
Sbjct: 1 MATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFI 60
Query: 294 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDF 473
K N+Y+VS + N N+ ++ FLYK VEV +EYFK++EEES+RDNFVVIYELLDE++DF
Sbjct: 61 KHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDF 120
Query: 474 GYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSW 587
G+PQTT+S+ILQEYITQEG KL P+ PMAVTNAVSW
Sbjct: 121 GFPQTTESRILQEYITQEGQKLISAPRPPMAVTNAVSW 158
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 226 bits (553), Expect = 8e-60
Identities = 101/158 (63%), Positives = 129/158 (81%)
Frame = +3
Query: 114 MSSSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYI 293
M++SA++ILD+KGK +ISRNYRGD+D+ IDKF+ LLMEKEEEG P+L + F +I
Sbjct: 1 MATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFI 60
Query: 294 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDF 473
K N+Y+VS + N N+ ++ FLYK VEV +EYFK++EEES+RDNFVVIYELLDE++DF
Sbjct: 61 KHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDF 120
Query: 474 GYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSW 587
G+PQTT+S+ILQEYITQEG KL P+ PMAVTNAVSW
Sbjct: 121 GFPQTTESRILQEYITQEGQKLISAPRPPMAVTNAVSW 158
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 217 bits (530), Expect = 5e-57
Identities = 101/158 (63%), Positives = 129/158 (81%)
Frame = +3
Query: 114 MSSSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYI 293
MS S ++ILD+KG V+ISRNYRGDVD+ I+KFMPLL+EKE+EG +P+L ++ YI
Sbjct: 1 MSISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYI 60
Query: 294 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDF 473
K N+Y+V+ +KKN N+ LV LYKIVEV EYFK LEEE++RDNFV+IYEL DE++DF
Sbjct: 61 KYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDF 120
Query: 474 GYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSW 587
GYPQTT+SKILQE+ITQ+G++LE + PMAVTNAVSW
Sbjct: 121 GYPQTTESKILQEFITQQGNRLE-TVRPPMAVTNAVSW 157
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 131 bits (317), Expect = 3e-31
Identities = 61/156 (39%), Positives = 101/156 (64%), Gaps = 3/156 (1%)
Frame = +3
Query: 129 IYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTNNL 308
+++ + KG+VLISR YR DV +D F ++ ++ + +P+ + +F ++K N+
Sbjct: 5 LFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ-VRSPVTNMARTSFFHVKRGNV 63
Query: 309 YIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQT 488
+I + T++N N A+VF FL + + M YF +L EE++++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQN 123
Query: 489 TDSKILQEYITQEGHKL---EMQPKIPMAVTNAVSW 587
TD +L+ +ITQ+G + E Q +I VT + W
Sbjct: 124 TDPGVLKTFITQQGVRTATKEEQSQITSQVTGQIGW 159
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 127 bits (307), Expect = 5e-30
Identities = 61/162 (37%), Positives = 101/162 (62%), Gaps = 9/162 (5%)
Frame = +3
Query: 129 IYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTNNL 308
+++ + KG+VLISR YR DV +D F ++ ++ + +P+ + +F ++K N+
Sbjct: 5 LFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ-VRSPVTNMARTSFFHVKRGNV 63
Query: 309 YIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQT 488
+I + T++N N A+VF FL + + M YF +L EE++++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQN 123
Query: 489 TDSKILQEYITQEGHKL---------EMQPKIPMAVTNAVSW 587
TD +L+ +ITQ+G + E Q +I VT + W
Sbjct: 124 TDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGW 165
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 126 bits (305), Expect = 9e-30
Identities = 61/162 (37%), Positives = 101/162 (62%), Gaps = 9/162 (5%)
Frame = +3
Query: 129 IYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTNNL 308
+++ + KG+VLISR YR DV +D F ++ ++ + +P+ + +F ++K N+
Sbjct: 5 LFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ-VRSPVTNMARTSFFHVKRGNV 63
Query: 309 YIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQT 488
+I + T++N N A+VF FL + + M YF +L EE++++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQN 123
Query: 489 TDSKILQEYITQEGHKL---------EMQPKIPMAVTNAVSW 587
TD +L+ +ITQ+G + E Q +I VT + W
Sbjct: 124 TDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGW 165
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 83.0 bits (196), Expect = 1e-16
Identities = 34/132 (25%), Positives = 75/132 (56%)
Frame = +3
Query: 123 SAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTN 302
++++ ++ G VL+ ++++ + + D F + + + P++ T + N
Sbjct: 3 NSLFFVNSSGDVLLEKHWKSVIHRSICDYFFDIQKKSIHPEDVPPIISTPHHYLINVYQN 62
Query: 303 NLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYP 482
NL++V+ +V FL+++++ T+YF E + S+++N V+++ELLDE++D G+P
Sbjct: 63 NLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEMLDNGFP 122
Query: 483 QTTDSKILQEYI 518
T+ ILQ+ I
Sbjct: 123 LVTEMNILQDLI 134
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 58.0 bits (134), Expect = 5e-09
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Frame = +3
Query: 126 AIYILDVKGKVLISRNYRGDVDL----GVIDKFMPLL-MEKEEEGMLTPLLQTSECTFAY 290
A IL GK+L++R + D+ G++D F L+ EKE ++T + Y
Sbjct: 5 AACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRYVY 64
Query: 291 IKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELID 470
+N+Y+V T KN+NI L V V+ EY + EE+ I + + DE++
Sbjct: 65 HPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFDEVVT 124
Query: 471 FGYPQTTDSKILQEYITQEGHK 536
GY ++ + ++ + + H+
Sbjct: 125 LGYRESVNLAQIRTFTEMDSHE 146
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +3
Query: 261 LQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVV 440
L+ + Y + +LY ++N N + +++ VE++ +YF + E I NF
Sbjct: 50 LEYKDLKVVYKRYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEK 109
Query: 441 IYELLDELIDFGYPQTTDSK-ILQEYITQEGHKLEMQPK 554
Y +LDE + G Q T K +L+ Q+ + E P+
Sbjct: 110 AYFILDEFLLAGEIQETSKKQVLKAIAAQDLIQEEETPQ 148
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 34.3 bits (75), Expect = 0.065
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 363 LYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG-YPQTTDSKILQEYI 518
++ VEV+ EYF + E + NF +Y ++DE+ G +T+ +K+L++ +
Sbjct: 84 IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
>Z36949-2|CAA85416.1| 184|Caenorhabditis elegans Hypothetical
protein F59E10.3 protein.
Length = 184
Score = 32.7 bits (71), Expect = 0.20
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%)
Frame = +3
Query: 117 SSSAIYILDVKGKVLISRNYRGDVDLGVIDK---FMPLLMEKEEEGMLTPLLQTSECTFA 287
S I ILD G ++++ Y G + + F L K +L T
Sbjct: 13 SIKGIVILDQDGNRVLAKYY-DRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVTCL 71
Query: 288 YIKTNNLY--IVSTTKKNAN-IALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLD 458
Y +LY ++ +T++N + LY V V+ K +E++++ D+ I ++D
Sbjct: 72 YRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLR--KNVEKKALIDSMDTIMLIID 129
Query: 459 ELIDFGYPQTTDSK 500
E+ D G TD++
Sbjct: 130 EICDEGIIMETDAQ 143
>AF077533-2|AAP40529.1| 972|Caenorhabditis elegans Hypothetical
protein F54G2.1b protein.
Length = 972
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 198 VIDKFMPLLMEKEEEGMLT 254
+IDK+ PL ++KEEE MLT
Sbjct: 429 IIDKWQPLTLDKEEEDMLT 447
>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
protein F54G2.1a protein.
Length = 1126
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 198 VIDKFMPLLMEKEEEGMLT 254
+IDK+ PL ++KEEE MLT
Sbjct: 413 IIDKWQPLTLDKEEEDMLT 431
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 294 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDE 461
K NLY +KN +I +++V K E+ E+F + +E D + E +E
Sbjct: 44 KKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEE-HDEYSAFKEAYEE 98
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +3
Query: 210 FMPLLMEKEEEGMLTP-----LLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKI 374
FM LL+ E L P +++ T+ IK +++ST + N + F+F+++
Sbjct: 981 FMHLLLVSARE-FLNPRNPSMIVEQLRATYENIKKGEKFMISTAIETRNEGIEFLFIFRT 1039
Query: 375 VEVMTEYFKELEEESIRDNFVVIYE 449
+YF L E+ ++F ++ +
Sbjct: 1040 YFTNDQYF--LTREATAESFRILLQ 1062
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +3
Query: 210 FMPLLMEKEEEGMLTP-----LLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKI 374
FM LL+ E L P +++ T+ IK +++ST + N + F+F+++
Sbjct: 981 FMHLLLVSARE-FLNPRNPSMIVEQLRATYENIKKGEKFMISTAIETRNEGIEFLFIFRT 1039
Query: 375 VEVMTEYFKELEEESIRDNFVVIYE 449
+YF L E+ ++F ++ +
Sbjct: 1040 YFTNDQYF--LTREATAESFRILLQ 1062
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +3
Query: 210 FMPLLMEKEEEGMLTP-----LLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKI 374
FM LL+ E L P +++ T+ IK +++ST + N + F+F+++
Sbjct: 981 FMHLLLVSARE-FLNPRNPSMIVEQLRATYENIKKGEKFMISTAIETRNEGIEFLFIFRT 1039
Query: 375 VEVMTEYFKELEEESIRDNFVVIYE 449
+YF L E+ ++F ++ +
Sbjct: 1040 YFTNDQYF--LTREATAESFRILLQ 1062
>U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 107 protein.
Length = 357
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 404 FFEVLSHNFNNFVQEYKHKCNISIFLCG*YNVQV 303
FFE L + N +++ + KC I LCG YN +V
Sbjct: 313 FFETL--DTLNIIEKAERKCQEEIALCGFYNFEV 344
>AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 404 FFEVLSHNFNNFVQEYKHKCNISIFLCG*YNVQV 303
FFE L + N +++ + KC I LCG YN +V
Sbjct: 313 FFETL--DTLNIIEKAERKCQEEIALCGFYNFEV 344
>AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 404 FFEVLSHNFNNFVQEYKHKCNISIFLCG*YNVQV 303
FFE L + N +++ + KC I LCG YN +V
Sbjct: 313 FFETL--DTLNIIEKAERKCQEEIALCGFYNFEV 344
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 27.9 bits (59), Expect = 5.7
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = -2
Query: 427 SRMLSSSNSLKYSVITSTI--LYKNTNTSAILAF--FFVVDTMYKLLVLI*ANVHSLVCN 260
SR LSS SL +S T + ++++T+T IL F F + L +L+ ++SL
Sbjct: 28 SRRLSSLASLPFSKTTPSFFQIHRHTHTHTILVFVVHFFISIHLVLSLLLKIVIYSLFSG 87
Query: 259 KGVNIPSSSFS 227
+ S FS
Sbjct: 88 APQTLQSCEFS 98
>Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical
protein C05A9.3 protein.
Length = 388
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 174 YRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTNNL 308
Y GDV+LG D PL++ E + P L T A I+ N+
Sbjct: 273 YGGDVNLGDEDGNTPLMLAVRESPLSWPCLHTLIFFGAQIEQKNM 317
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 312 IVSTTKKNANIALVFVFLYK 371
++ +TK+N NIA F LYK
Sbjct: 759 VIGSTKRNNNIAFFFFILYK 778
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 312 IVSTTKKNANIALVFVFLYK 371
++ +TK+N NIA F LYK
Sbjct: 756 VIGSTKRNNNIAFFFFILYK 775
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,391,838
Number of Sequences: 27780
Number of extensions: 277030
Number of successful extensions: 679
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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