Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c04r
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-6|AAA83169.1|  256|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U41533-6|AAA83169.1|  256|Caenorhabditis elegans Hypothetical
           protein R05F9.9 protein.
          Length = 256

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 47  NLLSPNPMFCRIKFLSNAINAPYG 118
           +L  PNP++CR+  ++N    P+G
Sbjct: 143 HLEQPNPVYCRVSLMANKFTFPFG 166


>Z77655-3|CAB01134.1|  426|Caenorhabditis elegans Hypothetical
           protein C56A3.3 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 434 ALIIVDSNYGSNRTKLFHFSK*KRFCCNH*AYD-VIAICFLVTSIFITSNTFY*VSMYI 607
           ++++V   Y S R   F+  K    C N    + VI IC   TS+F+T N+ Y + MY+
Sbjct: 158 SIVVVSIMYNSLRFPQFNLRK----CFNDITKEQVIEIC--PTSLFVTINSVYNIYMYM 210


>Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical
           protein C46C2.6a protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 443 IVDSNYGSNRTKLFHFSK*KRFCC 514
           I DS++G    KLF +   K+FCC
Sbjct: 81  IPDSSFGEPCIKLFSYQMTKKFCC 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,636,776
Number of Sequences: 27780
Number of extensions: 384887
Number of successful extensions: 826
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)