Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c04f
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    52   5e-08
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    41   1e-04
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    39   6e-04
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    36   0.006
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   1.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.1  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   2.1  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   2.8  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   4.8  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   6.4  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    25   6.4  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   8.5  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = +1

Query: 130 DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 222
           DR  KNG+ EYY+KW GY   DNTWEPE NL
Sbjct: 30  DRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query: 124 VLDRRIKN--GVLEYYLKWKGYSD-EDNTW-EPEDNLDCPDLI 240
           +LD R+K      +YYLKW+GY D  DNTW + ED   C +LI
Sbjct: 181 ILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELI 223


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 142 KNGVLEYYLKWKGYSD-EDNTWEPE-DNLDCPDLIQ 243
           K G  EY LKW+GY D  DNTW  E D   C  LI+
Sbjct: 94  KGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIE 129



 Score = 30.3 bits (65), Expect = 0.22
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 496 PAKQANVRCPQVVIQFYEERLTW 564
           P+   N +CPQ ++QFYE  LT+
Sbjct: 302 PSTITNKKCPQKMLQFYESHLTF 324


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 124 VLDRRI-KNGVLEYY-LKWKGYSDEDNTWEPEDNL 222
           ++D ++ +NG ++ Y ++W  YS   +TWEP +NL
Sbjct: 13  IVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL 47


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 475 TDEADLVPAKQANVRCPQVVIQFYEE 552
           T+++ L PAKQ N + P+ + Q Y+E
Sbjct: 75  TEDSSLSPAKQENEKSPEGIEQKYQE 100


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 157 EYYLKWKGYSDEDNTWEPEDNL 222
           E+ +KW  +S    TWEP +N+
Sbjct: 215 EFLIKWVNFSHLHCTWEPYNNI 236


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 71  TRKKKTNQKPKRNFLLKKFWTGALRMVFW 157
           T+ K   +KP +NF+ +  WT  L  +F+
Sbjct: 39  TKHKSLARKPSQNFITRTIWTFLLLGIFF 67


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 142 KNGVLEYYLKWKGYSDEDNTWEPED 216
           + G  EY++KW+    ++ TWE  D
Sbjct: 316 EEGKTEYFVKWRQLPYDNCTWEDAD 340


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 217 YPLVPMYYLHHCILSISSNI 158
           YPL P++ L +C+L I S++
Sbjct: 513 YPLAPIFSLVNCVLYIRSSV 532


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 497 GTRSASSVPCHFMRNMSSPLLSVAPIIFSGSNPRSKP 387
           G  S   +P   M N+SSPL++ +P   SG NP  +P
Sbjct: 401 GPNSIYKIPSASMVNLSSPLVT-SP---SGLNPTGRP 433


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 305 IQRSVNQPQPHLISKVQRKPKVMTRKHL 388
           I R++  P+P +I  +Q+ P  +  KH+
Sbjct: 220 IFRALGTPEPEVIKSMQQLPNYVEMKHI 247


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +2

Query: 299 IRIQRSVNQ-PQPHLISKVQRKPKV 370
           I+ +RS+++ PQ  ++ KV +KPKV
Sbjct: 111 IKQKRSLSESPQESMLEKVSKKPKV 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,917
Number of Sequences: 5004
Number of extensions: 37256
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)