Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c04f
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)        117   6e-27
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 54   1e-07
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)                52   4e-07
SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)                45   4e-05
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.058
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   30   1.2  
SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   28   6.6  
SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)                28   6.6  
SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)                27   8.8  
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
          Length = 226

 Score =  117 bits (282), Expect = 6e-27
 Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
 Frame = +1

Query: 124 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQXXXXXXXXXXXXXXXXXXXX 303
           V+D+R+ NG +EY LKWKGY D +NTWE E+ L CP+LI+                    
Sbjct: 33  VMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPELIEEYEKKKKASSKRKDSTSEKG 92

Query: 304 XXXXXXXXXXXPDLXXXXXXXXXXXXXXXFD---RGLEPEKIIGATDSSGELMFLMKWQG 474
                       +                 D    G E + I+GAT+  G++ FL++W+ 
Sbjct: 93  ESKPKKRKVNAYEELGMKAVEVEDASKDDVDPIAEGWEADTILGATEVDGQIHFLIQWKS 152

Query: 475 TDEADLVPAKQANVRCPQVVIQFYEERLTW 564
           TD ADL+P+K AN++ PQ+VI+FYEER+TW
Sbjct: 153 TDRADLIPSKVANLKWPQIVIKFYEERVTW 182



 Score = 31.9 bits (69), Expect = 0.41
 Identities = 13/50 (26%), Positives = 31/50 (62%)
 Frame = +1

Query: 406 EPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEER 555
           E EK++     +G + +L+KW+G  +++     +  ++CP+ +I+ YE++
Sbjct: 29  EVEKVMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPE-LIEEYEKK 77


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +1

Query: 124  VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLI 240
            +LDRR++ G +EY ++WKGY   D+TWEP  NL  C +LI
Sbjct: 910  ILDRRVQRGKVEYLVRWKGYGPADDTWEPSKNLKGCKELI 949


>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
          Length = 411

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 19/40 (47%), Positives = 30/40 (75%)
 Frame = +1

Query: 124 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQ 243
           +L  R+++G + Y++KWKGYS   NTWEPE+N+  P L++
Sbjct: 30  ILKERVRDGKVWYFIKWKGYSQRYNTWEPEENVLDPRLLK 69


>SB_26989| Best HMM Match : Chromo (HMM E-Value=5.5e-10)
          Length = 517

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 15/35 (42%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
 Frame = +1

Query: 142 KNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQ 243
           ++GV  + ++WKGY+ +D+TWEPE+N+ +C D+++
Sbjct: 13  QDGVRYFKVRWKGYTPDDDTWEPEENVFECEDVLE 47


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 124 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNL 222
           ++ RRI ++G  EY + WK Y   ++TWEP +NL
Sbjct: 27  IIGRRITQSGKEEYLVHWKKYKVWESTWEPLENL 60


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 142  KNGVLEYYLKWKGYSDEDNTWEP 210
            + G  EY++ WKG+ D+ N+W P
Sbjct: 1238 RGGRGEYWVHWKGWPDKYNSWVP 1260


>SB_51384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 148 GVLEYYLKWKGYSDEDNTWEP 210
           G  +Y++ WKG+ ++ N+W P
Sbjct: 100 GARKYWVHWKGWPNKYNSWVP 120


>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 124  VLDRRIKNGVLEYYLKWKGYSDEDNTWEP 210
            V+  R + G   Y++ WKG+ D+  +W P
Sbjct: 1081 VVKTRKRGGRKVYWVHWKGWPDKYKSWVP 1109


>SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)
          Length = 132

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 124 VLDRRI--KNGVLEYYLKWKGYSDEDNTWEPEDNL 222
           ++ +RI  +NG  EY +KWK +    +T EP ++L
Sbjct: 46  IISQRITSRNGDKEYLVKWKNWPIWTSTLEPANHL 80


>SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)
          Length = 590

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 124 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 222
           +L+ R ++   EY + W   SD+  TWEP  N+
Sbjct: 406 LLNCRRRSKTTEYLVLW---SDDSQTWEPRHNI 435


>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 124  VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 222
            +L+ R ++   EY + W   SD+  TWEP  N+
Sbjct: 975  LLNCRRRSKTTEYLVLW---SDDSQTWEPRHNI 1004


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,824,800
Number of Sequences: 59808
Number of extensions: 264804
Number of successful extensions: 701
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)