Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c04f
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical pr... 70 1e-12
AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain... 70 1e-12
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 50 1e-06
Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain... 50 2e-06
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 48 4e-06
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 37 0.010
Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical pr... 36 0.022
U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical pr... 34 0.089
AF025463-3|AAB71009.2| 403|Caenorhabditis elegans Hypothetical ... 32 0.27
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 31 0.48
Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical pr... 28 4.4
AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical ... 28 4.4
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical... 27 7.7
>Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical
protein K01G5.2a protein.
Length = 175
Score = 69.7 bits (163), Expect = 1e-12
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Frame = +1
Query: 124 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQXXXXXXXXXXXXXXXXXXX 300
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFSKREKPIRKRHSQ 83
Query: 301 XXXXXXXXXXXXPDLXXXXXXXXXXXXXXXFDRGLEPEKIIGATDSSGELMFLMKWQGTD 480
D G + + I+G T GEL FL K+ D
Sbjct: 84 KPEPSEDQADPEEDKDEKKETNQNDKFSL---EGKQLKCIVGLTKGPGELHFLCKFSD-D 139
Query: 481 EADLVPAKQANVRCPQVVIQFYEERLTWHTPALDE 585
A L+PAK+ N R P VI++YE +LT P DE
Sbjct: 140 TARLLPAKEVNSRYPSQVIRYYESKLTIQDPKADE 174
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 412 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 552
EK++ T +G FL++WQG E+D + N++C +++ +F E
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain
protein protein.
Length = 175
Score = 69.7 bits (163), Expect = 1e-12
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 1/155 (0%)
Frame = +1
Query: 124 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQXXXXXXXXXXXXXXXXXXX 300
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFSKREKPIRKRHSQ 83
Query: 301 XXXXXXXXXXXXPDLXXXXXXXXXXXXXXXFDRGLEPEKIIGATDSSGELMFLMKWQGTD 480
D G + + I+G T GEL FL K+ D
Sbjct: 84 KPEPSEDQADPEEDKDEKKETNQNDKFSL---EGKQLKCIVGLTKGPGELHFLCKFSD-D 139
Query: 481 EADLVPAKQANVRCPQVVIQFYEERLTWHTPALDE 585
A L+PAK+ N R P VI++YE +LT P DE
Sbjct: 140 TARLLPAKEVNSRYPSQVIRYYESKLTIQDPKADE 174
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 412 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 552
EK++ T +G FL++WQG E+D + N++C +++ +F E
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 50.4 bits (115), Expect = 1e-06
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +1
Query: 124 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQ 243
VL++R+ G EYY+KW+G+ + + +WEP +NL C +IQ
Sbjct: 42 VLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQ 81
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +1
Query: 418 IIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEERL 558
IIG T + GEL FL K+ D L+P ++ANVR P VI+FYE RL
Sbjct: 125 IIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKFYETRL 170
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 412 EKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 552
EK++ + G + +KWQG E++ N++C +++ ++ +E
Sbjct: 40 EKVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEYEKE 86
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 50.4 bits (115), Expect = 1e-06
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +1
Query: 124 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQ 243
VL++R+ G EYY+KW+G+ + + +WEP +NL C +IQ
Sbjct: 42 VLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQ 81
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +1
Query: 418 IIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEERL 558
IIG T + GEL FL K+ D L+P ++ANVR P VI+FYE RL
Sbjct: 125 IIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKFYETRL 170
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 412 EKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 552
EK++ + G + +KWQG E++ N++C +++ ++ +E
Sbjct: 40 EKVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEYEKE 86
>Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical
protein K01G5.2c protein.
Length = 303
Score = 49.6 bits (113), Expect = 2e-06
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Frame = +1
Query: 124 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQXXXXXXXXXXXXXXXXXXX 300
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFSKREKPIRKRHSQ 83
Query: 301 XXXXXXXXXXXXPDLXXXXXXXXXXXXXXXFDRGLEPEKIIGATDSSGELMFLMKWQGTD 480
D G + + I+G T GEL FL K+ D
Sbjct: 84 KPEPSEDQADPEEDKDEKKETNQNDKFSL---EGKQLKCIVGLTKGPGELHFLCKF-SDD 139
Query: 481 EADLVPAKQANVR 519
A L+PAK+ N R
Sbjct: 140 TARLLPAKEVNSR 152
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 412 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 552
EK++ T +G FL++WQG E+D + N++C +++ +F E
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical
protein K01G5.2b protein.
Length = 301
Score = 49.6 bits (113), Expect = 2e-06
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Frame = +1
Query: 124 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQXXXXXXXXXXXXXXXXXXX 300
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFSKREKPIRKRHSQ 83
Query: 301 XXXXXXXXXXXXPDLXXXXXXXXXXXXXXXFDRGLEPEKIIGATDSSGELMFLMKWQGTD 480
D G + + I+G T GEL FL K+ D
Sbjct: 84 KPEPSEDQADPEEDKDEKKETNQNDKFSL---EGKQLKCIVGLTKGPGELHFLCKF-SDD 139
Query: 481 EADLVPAKQANVR 519
A L+PAK+ N R
Sbjct: 140 TARLLPAKEVNSR 152
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 412 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 552
EK++ T +G FL++WQG E+D + N++C +++ +F E
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain
protein protein.
Length = 301
Score = 49.6 bits (113), Expect = 2e-06
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Frame = +1
Query: 124 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQXXXXXXXXXXXXXXXXXXX 300
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFSKREKPIRKRHSQ 83
Query: 301 XXXXXXXXXXXXPDLXXXXXXXXXXXXXXXFDRGLEPEKIIGATDSSGELMFLMKWQGTD 480
D G + + I+G T GEL FL K+ D
Sbjct: 84 KPEPSEDQADPEEDKDEKKETNQNDKFSL---EGKQLKCIVGLTKGPGELHFLCKF-SDD 139
Query: 481 EADLVPAKQANVR 519
A L+PAK+ N R
Sbjct: 140 TARLLPAKEVNSR 152
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 412 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 552
EK++ T +G FL++WQG E+D + N++C +++ +F E
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 48.4 bits (110), Expect = 4e-06
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +1
Query: 124 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQ 243
+L+ R K G E+Y+KW GY N+WEP++N+ P LI+
Sbjct: 13 ILEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLIE 52
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 130 DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLD-CPDL 237
D+R ++ Y + W+GY ++ TWEPE+NL+ C +L
Sbjct: 42 DKR-RHSKYAYLVHWRGYDWKERTWEPEENLENCEEL 77
>Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical
protein T09A5.8 protein.
Length = 339
Score = 35.9 bits (79), Expect = 0.022
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +1
Query: 124 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 222
+L ++ + +L ++W GY +++TWEPE++L
Sbjct: 29 ILAHKVTDNLLVLQVRWLGYGADEDTWEPEEDL 61
>U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical
protein C29H12.5 protein.
Length = 706
Score = 33.9 bits (74), Expect = 0.089
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 160 YYLKWKGYSDEDNTWEPEDNLDCPDLI 240
+ +KW GY +++ TWEPE N+ PD +
Sbjct: 95 FLVKWLGYGNKEMTWEPESNI--PDSV 119
>AF025463-3|AAB71009.2| 403|Caenorhabditis elegans Hypothetical
protein K10B4.4 protein.
Length = 403
Score = 32.3 bits (70), Expect = 0.27
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 579 ECWCVPCEPFFIKLNNYLWAPHISLFCWYKICFICSLP 466
E W C P K+ + LW ++ + + I F+C+LP
Sbjct: 130 ERWLAICHPLRSKIFSTLWRANVLIILAWTISFVCALP 167
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 31.5 bits (68), Expect = 0.48
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 157 EYYLKWKGYSDEDNTWEPEDNL 222
++++KW G+S NTWE E++L
Sbjct: 238 QFFVKWTGWSHLHNTWESENSL 259
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 157 EYYLKWKGYSDEDNTWEPE 213
EY +KW G D TWE E
Sbjct: 333 EYLIKWSGLPYSDCTWEDE 351
>Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical
protein F55A11.7 protein.
Length = 395
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 561 CEPFFIKLNNYLWAPHISLFCWYKICFICSLPFHEEHEFTTTIRSANYFFWF 406
C ++I+ Y++ + + I F SL FHE EF T + S FF+F
Sbjct: 225 CRRYYIQHLCYVFL-FAFVLTMFGIAFHGSLIFHETVEFATIVLSVLAFFFF 275
>AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical
protein Y39C12A.7 protein.
Length = 324
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 240 YKIWTIKIILWFPCIIFITVSFPFQVIFQNTILNAPVQNFFNRK 109
+ I+ I II C F T +PF V+F + I++ + N N K
Sbjct: 123 FLIYLISIISVLVCTQFSTTFYPFLVLFMSNIISY-IVNIINYK 165
>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
protein F25G6.2 protein.
Length = 1143
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 124 LFQQKIPLRLLVRFLFSCRPLSYKA*AIIKFTLTKHIHRHN 2
L QK+ +RL RF C P K +I+F L H R++
Sbjct: 572 LMYQKLVVRLTTRFWEDCTPFEEK---LIEFVLADHKKRND 609
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,929,127
Number of Sequences: 27780
Number of extensions: 210034
Number of successful extensions: 670
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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