Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c02r
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical ... 188 4e-48
Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical pr... 91 1e-18
Z81044-2|CAB02813.1| 337|Caenorhabditis elegans Hypothetical pr... 80 1e-15
Z37093-3|CAA85465.1| 448|Caenorhabditis elegans Hypothetical pr... 61 1e-09
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical... 29 4.7
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 28 8.2
AF162673-1|AAF80461.1| 568|Caenorhabditis elegans CNT-like nucl... 28 8.2
AF016413-5|AAB65255.1| 568|Caenorhabditis elegans Hypothetical ... 28 8.2
>AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical
protein W02F12.5 protein.
Length = 463
Score = 188 bits (458), Expect = 4e-48
Identities = 87/126 (69%), Positives = 103/126 (81%)
Frame = -3
Query: 754 VVPVIRNXQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVFGSLMGTPIIN 575
VVPV+RN ++M YA IEL +A L KAR GKL +E+M+GGTFTISNGGVFGS+ GTPIIN
Sbjct: 338 VVPVLRNVESMNYAQIELELANLGVKARDGKLAVEDMEGGTFTISNGGVFGSMFGTPIIN 397
Query: 574 PPQSAILGMHGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDPA 395
PPQSAILGMHG+F+R + +NG+ IRP+M IALTYDHRLIDGREAV FL+KIK VEDP
Sbjct: 398 PPQSAILGMHGVFDRVVPVNGKPEIRPIMQIALTYDHRLIDGREAVTFLKKIKTAVEDPR 457
Query: 394 TIVAGL 377
+ L
Sbjct: 458 IMFMNL 463
>Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical
protein F23B12.5 protein.
Length = 507
Score = 90.6 bits (215), Expect = 1e-18
Identities = 53/126 (42%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Frame = -3
Query: 754 VVPVIRNXQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVFGSLMG-TPII 578
+ P+I N A I I LA++AR GKL E GGTFT+SN G+FGS+ T II
Sbjct: 382 ITPIIFNAHAKGLATIASEIVELAQRAREGKLQPHEFQGGTFTVSNLGMFGSVSDFTAII 441
Query: 577 NPPQSAILGMHGIFER--PIALNGQVVIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVE 404
NPPQS IL + G ++ P G I+ M + L+ DHR +DG ++LR KE +E
Sbjct: 442 NPPQSCILAIGGASDKLVPDEAEGYKKIKTMK-VTLSCDHRTVDGAVGAVWLRHFKEFLE 500
Query: 403 DPATIV 386
P T++
Sbjct: 501 KPHTML 506
>Z81044-2|CAB02813.1| 337|Caenorhabditis elegans Hypothetical
protein C30H6.7 protein.
Length = 337
Score = 80.2 bits (189), Expect = 1e-15
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Frame = -3
Query: 754 VVPVIRNXQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVFGSLMG-TPII 578
+ P++ N + I + L+ AR KL ++ GG+FTISN G+FGS+ T II
Sbjct: 198 ITPIVENSDILGVLAISSKVKELSGLARESKLKPQQFQGGSFTISNLGMFGSVTNFTAII 257
Query: 577 NPPQSAILGMHGIFERPIALNGQVVIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDP 398
NPPQ AIL + G ++++GQ+ + +M + L +D R I A FL E + DP
Sbjct: 258 NPPQCAILTIGGTRSEVVSVDGQLETQKLMGVNLCFDGRAISEECAKRFLLHFSESLSDP 317
Query: 397 ATIVA 383
++A
Sbjct: 318 ELLIA 322
>Z37093-3|CAA85465.1| 448|Caenorhabditis elegans Hypothetical
protein ZK669.4 protein.
Length = 448
Score = 60.9 bits (141), Expect = 1e-09
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Frame = -3
Query: 754 VVPVIRNXQNMTYADIELTIAGLAEKARTGKLTIEEMDGGTFTISNGGVFGSLMGTPIIN 575
VVP I+N + + +I + L E + ++ E++ GTF++SN G G +P++
Sbjct: 321 VVPNIKNCEQRSIFEIAQELNRLLEAGKKQQIKREDLIDGTFSLSNIGNIGGTYASPVVF 380
Query: 574 PPQSAILGMHGIFERP-IALNGQVVIRPMMYIALTYDHRLIDGREAVLFLRKIKEGVEDP 398
PPQ AI + I + P + V+ +M ++ DHR++DG F + K +E P
Sbjct: 381 PPQVAIGAIGKIEKLPRFDKHDNVIPVNIMKVSWCADHRVVDGATMARFSNRWKFYLEHP 440
Query: 397 ATIVAGL 377
+ ++A L
Sbjct: 441 SAMLAQL 447
>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
protein Y47G6A.17 protein.
Length = 1736
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 497 PDHDLAVQSDGPLEDAVHTQYSRLRRIDDWRSHQRPENAAIADGERSAVHF 649
P + +Q+DGP E+ V Y +L + S PE + +G R + F
Sbjct: 10 PQLEEFLQNDGPTEEEVRVWYDKLAEYEIEGSESPPEIELLYNGARYLMGF 60
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +3
Query: 441 ASRPSISLWS*VRAIYIMG----LITTWPFRAMGRSKMPC 548
AS +IS+W IY++G LI F +MGRSK C
Sbjct: 429 ASLNAISIWQLFTYIYVIGIVIELIIITLFASMGRSKTCC 468
>AF162673-1|AAF80461.1| 568|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 568
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -3
Query: 148 GYVLFVLFIVIFSN 107
GYV FV+F+V+FSN
Sbjct: 146 GYVFFVIFMVVFSN 159
>AF016413-5|AAB65255.1| 568|Caenorhabditis elegans Hypothetical
protein F27E11.1 protein.
Length = 568
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -3
Query: 148 GYVLFVLFIVIFSN 107
GYV FV+F+V+FSN
Sbjct: 146 GYVFFVIFMVVFSN 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,471,950
Number of Sequences: 27780
Number of extensions: 304992
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -