Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c02f
         (542 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.32 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.32 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.32 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.32 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.32 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.32 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.32 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.32 
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   0.57 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   0.57 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.3  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   2.3  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   3.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.0  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   5.3  
Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      21   7.0  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   9.2  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   9.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.2  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 321 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPA 170


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 321 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 321 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 321 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 321 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 321 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 77  APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 126


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 321 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 321 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 402 QTEPTESSGRPQSSSIHPLHESPACRARCDHSKFPG 509
           +T P E+S  PQS+S +      AC+    +++FPG
Sbjct: 152 KTSPNEASMSPQSTSSNNSASPKACQFL--YNQFPG 185


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 402 QTEPTESSGRPQSSSIHPLHESPACRARCDHSKFPG 509
           +T P E+S  PQS+S +      AC+    +++FPG
Sbjct: 172 KTSPNEASMSPQSTSSNNSASPKACQFL--YNQFPG 205


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 266 VSTFNKRKCYDAARSTSRRCTGV---RASPSASSQQLKRPKYLHPYTQP 403
           VS   KR+  D  ++ S   +G     +SPS+ + Q  +  Y  P TQP
Sbjct: 39  VSQIVKREPMDEDKNDSGVTSGSDFHSSSPSSDTSQDLQHSYQSPQTQP 87


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 467 GFVKWMDAT*LWATRALGWFSLVACKGASILG 372
           GF  W+     W +  +GW  +   K A I G
Sbjct: 477 GFAGWVTDGNNWCSPYIGWQKVYENKPAKIAG 508


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 511 SPGNLEWSHLALQAGDS*SGWMLLDCGRPELSVG 410
           SP + EW    L A  S + W+L      +L++G
Sbjct: 220 SPLDGEWQRDNLNANSSITHWILSGADPQKLAIG 253


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 484 DVTTPSFPDSVSE 522
           DV TPS P S+SE
Sbjct: 59  DVPTPSSPRSISE 71


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 351 LQVNNSNAQNTCTLTRNQTEPTESSGRPQSSS 446
           LQ+ N   +    L  +Q+ P  SSG   SSS
Sbjct: 358 LQLINEMKKRYSALINSQSCPITSSGSTDSSS 389


>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 363 NSNAQNTCTLTRNQTEPTESSG 428
           N  AQN  T  R Q +   SSG
Sbjct: 39  NQTAQNVDTFVREQIDFVGSSG 60


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 279 ISENATTLLEAHPD 320
           ISEN+T L + H D
Sbjct: 11  ISENSTYLFDKHED 24


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 188 ESYVTIFCS 214
           E+YVT FCS
Sbjct: 47  ENYVTFFCS 55


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 524 PSETESGKLGVVTSCSTSRGFVKW 453
           P     G +GV   C TS   ++W
Sbjct: 214 PPPGSLGSMGVSVPCGTSGNPLEW 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,810
Number of Sequences: 336
Number of extensions: 2965
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)