Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c02f
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    29   0.44 
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   1.4  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.4  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.1  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   4.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   4.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   5.5  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.5  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.2  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    25   9.5  

>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 375 QNTCTLTRNQTEPTESSGRPQSSSIHP 455
           +NT ++ R +T PT+SSG  ++   HP
Sbjct: 106 ENTSSVKRQKTLPTQSSGEEEAKYSHP 132


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 260 LRVSTFNKRKCYDAARS--TSRRCTGVRASPSASSQQL 367
           LR+S+FN +  Y ++RS  T+    G  ASPS +   L
Sbjct: 252 LRISSFNTKNDYSSSRSKTTASSSNGTFASPSFNISSL 289


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +3

Query: 270 VRSISENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSS 443
           V ++  N+   L ++  +VP+    HP+ +N S  + +  +      P +S    Q+S
Sbjct: 349 VTTVPSNSPATLNSYTTSVPSGMSRHPMLMNPSTPEPSLGVNSPSLRPLQSLNNVQNS 406


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +3

Query: 273 RSISENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIH 452
           R+  E+  T L+    A+P S PV P+       QN+     ++  P E  G   + SIH
Sbjct: 417 RAPEESPMTFLQKKMAALPTSSPVRPMLKPTLQLQNS---PLSKLVPQE-VGNKVNDSIH 472

Query: 453 PLHESPA 473
                P+
Sbjct: 473 TTSNQPS 479


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 302 ARSTSRRCTGVRASPSASSQQLKRPKYLHP-YTQPN 406
           A  +S   T   ASP+  +Q   +P Y  P Y+QP+
Sbjct: 71  AGGSSTGSTPRTASPAVGNQDYSKPSYSQPSYSQPS 106


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 303 LEAHPDAVPASG-PVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIH 452
           ++A   ++P SG  + P++ N+S++ +  +   N    TESS RP SS ++
Sbjct: 145 MQASVHSLPLSGCSIGPVRTNHSSSLSNSS---NSLLQTESSLRPNSSFVN 192


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/64 (26%), Positives = 23/64 (35%)
 Frame = +3

Query: 276 SISENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIHP 455
           S + N TT       A        P    N++ Q+T   TRN T    S+G    +    
Sbjct: 143 STTANRTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAGTGA 202

Query: 456 LHES 467
            H S
Sbjct: 203 SHRS 206


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 285 ENATTLLEAHPDA--VPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIH 452
           E AT+ LE   ++   P      P + +NS   N        T PT S+G P  +S+H
Sbjct: 22  EAATSRLEDLVESGHKPLPNMHRPSRDSNSQTHNISFNIGTPTAPTVSTGSPAVASLH 79


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 333 SGPVHPLQVNNSN-AQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPACRARCDHSKFPG 509
           +GP  P+ +N SN A +    +     P   S    S+S  PL   P+ +    HS F  
Sbjct: 58  TGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSSASSPPLRRLPSVQ----HSTFDD 113

Query: 510 L 512
           L
Sbjct: 114 L 114


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 282 SENATTLLEAHPDAVPASGPVHP 350
           S+ A  L+E + DAVPAS    P
Sbjct: 924 SDKAPDLIELNRDAVPASADTEP 946


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 408 EPTES-SGRPQSSSIHPLHESPA 473
           EP E   G P+ +S+HP+  +PA
Sbjct: 218 EPAEGLPGTPKPTSLHPVFSNPA 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,703
Number of Sequences: 5004
Number of extensions: 46030
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)