Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c02f
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 32 0.26
04_03_0151 + 11905926-11906618 28 4.2
01_01_0842 - 6571432-6571487,6571586-6571675,6571967-6572274,657... 28 4.2
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 27 7.3
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 27 7.3
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 27 7.3
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 27 9.7
09_02_0338 + 7426999-7428322,7428390-7428646 27 9.7
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 32.3 bits (70), Expect = 0.26
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 270 VRSISENATT--LLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSS 443
+++ SEN T +L + D +P HP N NAQ + +PT +SG P SS
Sbjct: 401 LQTASENPPTFAVLSSRSDVLPEDQKEHPAA--NLNAQIESPEDHKEVDPTTASGIPSSS 458
Query: 444 SI 449
+
Sbjct: 459 GV 460
>04_03_0151 + 11905926-11906618
Length = 230
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 285 ENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTR 398
+ +TLL HP +S P HP V++SNA + R
Sbjct: 148 QRGSTLLRQHPRQA-SSAPGHPAVVSSSNAPRIAPIQR 184
>01_01_0842 -
6571432-6571487,6571586-6571675,6571967-6572274,
6572872-6573037,6573659-6573841,6574321-6574426,
6574537-6574701,6575202-6575262,6577147-6577208
Length = 398
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +3
Query: 318 DAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPACRARCDHS 497
+ +PA+G HP+++N+ N + N T G S+ + SP+ A +H+
Sbjct: 230 NGIPAAGGYHPIRMNSGNDM----VVDNGAPETAHVGATCSAMSSEMAVSPSSAASSNHA 285
Query: 498 KF 503
F
Sbjct: 286 PF 287
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 27.5 bits (58), Expect = 7.3
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +3
Query: 303 LEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPACRA 482
++A PDA P + +N S+A T+ PT SS R ++ S H HE P
Sbjct: 74 VDAVPDAAPQLSSGNHAHMN-SDAD--ATVLHASRLPTHSSSRDETKSNHTAHE-PESGG 129
Query: 483 RCDHSK 500
D +K
Sbjct: 130 DADDTK 135
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 402 QTEPTESSGRPQSSSIHPLHESPA 473
Q +P E++GR SSS+ P ES A
Sbjct: 9 QPQPQEAAGREASSSLSPAKESAA 32
>05_03_0359 - 12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 273 RSISENATTLLEAHPDAVPASGPVHPLQVNN 365
R + + + L HP A PA+GP+H + +NN
Sbjct: 1625 REMEDKESRKLVYHP-ATPAAGPLHGVALNN 1654
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 346 WTGPDAGTASGCASSSVVAFS 284
WTG +A +SG SSS+++FS
Sbjct: 578 WTGTEAPESSGNYSSSLISFS 598
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 527 SPSETESGKLGVVTSCSTSRGFVKWMDAT 441
S T+ VV SC+++ GF +W AT
Sbjct: 234 SEKPTKGAAAHVVVSCASTPGFYRWRPAT 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,514
Number of Sequences: 37544
Number of extensions: 287419
Number of successful extensions: 740
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -