Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c02f
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_33366| Best HMM Match : 7tm_1 (HMM E-Value=2.29813e-43)             30   1.1  
SB_25010| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     28   5.7  
SB_37401| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_28626| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_23190| Best HMM Match : MHC_I_C (HMM E-Value=1.5)                   27   7.5  
SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_59615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +3

Query: 273 RSISENATTLLEAHPDA-VPASGPVHPLQVNNSNA--QNTCTLTRNQTEPTESSG 428
           R I  +  TLL +HPD  +P +G  +P     S A  +  C LT++    T  SG
Sbjct: 83  RHIQSSVDTLLTSHPDCLIPVTGDFNPTSTRLSAATIRRKCGLTQSIKVLTRDSG 137


>SB_33366| Best HMM Match : 7tm_1 (HMM E-Value=2.29813e-43)
          Length = 364

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 333 SGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSS 446
           SG    L+V +S+  NT T+T+ Q+E    S RP  +S
Sbjct: 5   SGSPSSLEVISSDGNNTNTITQGQSENDTGSSRPGGTS 42


>SB_25010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +1

Query: 232 TLIGVVYLFVKGKYVQ*AKMLRRCSKHIQTLYRRQGQSIRFKSTTQTPKILAPLHATKLN 411
           TL+GV  L+  G +    ++ RR    ++  + RQ   IR K  T+    + P  ATK N
Sbjct: 215 TLVGVTDLYYVGSFSTFERIARRF--RLENTFERQ---IRAKINTEMAVAVTPDSATKRN 269

Query: 412 QP 417
           +P
Sbjct: 270 KP 271


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 297 TLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQS 440
           T + +HP A   + P H  QV ++      TLTR  ++P    G  +S
Sbjct: 210 TRVPSHPCATHGTTPSHGYQVTHALYARYDTLTRVSSQPWSRQGTKRS 257


>SB_37401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = +3

Query: 327 PASGPVHPLQVNNSNAQNTCTLTR-----NQTEPTESSGRPQSSSIHPLHE-SPACRARC 488
           P    + PL+  + N++N C   R      +  P   + RP   +I PL E SP     C
Sbjct: 32  PTQRTIAPLREQSPNSENNCPTQRTIAPLREQLPHSENNRPTQRTIAPLREQSPHSENNC 91


>SB_28626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 399 NQTEPTESSGRPQSSSIHPLHESPACRARCDHSKFP 506
           N T P   +G PQ   I P+  S  C  RC   + P
Sbjct: 881 NYTRPAFLAGDPQVVPIVPVSRSIECACRCTRVQVP 916


>SB_23190| Best HMM Match : MHC_I_C (HMM E-Value=1.5)
          Length = 182

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 357 VNNS--NAQNTCTLTRNQTEPTESSGRPQSSSIHPLHES 467
           VNNS     N+C    N  EP  +S  P ++S  P++ S
Sbjct: 45  VNNSCEPVNNSCEHVNNSREPVNNSREPVNNSREPVNNS 83


>SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 375 QNTCTLTRNQTEPTESSGRPQSSSIHPLHE-SPACRARCDHSKF-PGL 512
           ++ C L   Q +PTE   +   S +H  H+   AC  R   + F PG+
Sbjct: 218 EDVCRLDLEQVDPTEFLRKTLMSRVHASHQGEQACLRRARDALFWPGM 265


>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 487 VTTPSFPDSVSEGDVKLD 540
           V TP F +SV+EGD++ D
Sbjct: 50  VNTPPFAESVTEGDIRWD 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,083,574
Number of Sequences: 59808
Number of extensions: 344204
Number of successful extensions: 1295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)