Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11c02f
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    29   2.2  
L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger pro...    29   2.2  
L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger pro...    29   2.2  
Z81495-5|CAB04059.1|  178|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z81134-7|CAD56602.1|  879|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z81134-6|CAB03450.2|  795|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AL117202-32|CAD56611.1|  879|Caenorhabditis elegans Hypothetical...    27   6.6  
AL117202-31|CAD56610.1|  795|Caenorhabditis elegans Hypothetical...    27   6.6  
Z74046-4|CAC42385.1|  162|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z74028-9|CAC42259.1|  162|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z11126-7|CAO82061.1|  522|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z11126-6|CAA77471.2|  480|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 ISENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIHP- 455
           I  N +TL    P +   +   H LQ     +     +T+NQ  P+E +G P +S +   
Sbjct: 332 IMANGSTL----PPSSETTVGTHCLQQLQIQSAAAAAITQNQIGPSELNGYPAASQLSSF 387

Query: 456 LHESPA 473
           +HE PA
Sbjct: 388 MHEIPA 393


>L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform c protein.
          Length = 635

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 ISENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIHP- 455
           I  N +TL    P +   +   H LQ     +     +T+NQ  P+E +G P +S +   
Sbjct: 100 IMANGSTL----PPSSETTVGTHCLQQLQIQSAAAAAITQNQIGPSELNGYPAASQLSSF 155

Query: 456 LHESPA 473
           +HE PA
Sbjct: 156 MHEIPA 161


>L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform a protein.
          Length = 867

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 279 ISENATTLLEAHPDAVPASGPVHPLQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIHP- 455
           I  N +TL    P +   +   H LQ     +     +T+NQ  P+E +G P +S +   
Sbjct: 332 IMANGSTL----PPSSETTVGTHCLQQLQIQSAAAAAITQNQIGPSELNGYPAASQLSSF 387

Query: 456 LHESPA 473
           +HE PA
Sbjct: 388 MHEIPA 393


>Z81495-5|CAB04059.1|  178|Caenorhabditis elegans Hypothetical
           protein F08G2.5 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 387 TLTRNQTEPTESSGRPQSSSIHPLHESPACRAR 485
           TLT      T+    P+SS + P+ ESPA RAR
Sbjct: 43  TLTSQDRRDTQGCQYPRSSEL-PISESPAPRAR 74


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 357 VNNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           V+ S   +  TL  +   P  SS  P SSS  P  +SPA
Sbjct: 359 VSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSPA 397


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 357 VNNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           V+ S   +  TL  +   P  SS  P SSS  P  +SPA
Sbjct: 566 VSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSPA 604


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 357 VNNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           V+ S   +  TL  +   P  SS  P SSS  P  +SPA
Sbjct: 566 VSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSPA 604


>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical protein
            C09F9.2 protein.
          Length = 1642

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = +3

Query: 351  LQVNNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPACRARCDH 494
            ++ +  NA+   T+   +   T    RPQ  ++H +H    C     H
Sbjct: 1072 MKYHGKNARGVMTVNFFEEVETSVESRPQPPTVHGMHLEDTCEGSIRH 1119


>Z81134-7|CAD56602.1|  879|Caenorhabditis elegans Hypothetical
           protein T28D6.5b protein.
          Length = 879

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 345 HPLQVNNSNAQNT-CTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           HPL V  S  Q+    L  NQTE      RP SS   P+  +PA
Sbjct: 67  HPLSVPESLVQSPRAILCNNQTEYECVCMRPYSSPHSPVRPTPA 110


>Z81134-6|CAB03450.2|  795|Caenorhabditis elegans Hypothetical
           protein T28D6.5a protein.
          Length = 795

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 345 HPLQVNNSNAQNT-CTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           HPL V  S  Q+    L  NQTE      RP SS   P+  +PA
Sbjct: 67  HPLSVPESLVQSPRAILCNNQTEYECVCMRPYSSPHSPVRPTPA 110


>AL117202-32|CAD56611.1|  879|Caenorhabditis elegans Hypothetical
           protein T28D6.5b protein.
          Length = 879

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 345 HPLQVNNSNAQNT-CTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           HPL V  S  Q+    L  NQTE      RP SS   P+  +PA
Sbjct: 67  HPLSVPESLVQSPRAILCNNQTEYECVCMRPYSSPHSPVRPTPA 110


>AL117202-31|CAD56610.1|  795|Caenorhabditis elegans Hypothetical
           protein T28D6.5a protein.
          Length = 795

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 345 HPLQVNNSNAQNT-CTLTRNQTEPTESSGRPQSSSIHPLHESPA 473
           HPL V  S  Q+    L  NQTE      RP SS   P+  +PA
Sbjct: 67  HPLSVPESLVQSPRAILCNNQTEYECVCMRPYSSPHSPVRPTPA 110


>Z74046-4|CAC42385.1|  162|Caenorhabditis elegans Hypothetical
           protein C14C10.6 protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 323 SVWMCFEQRRSIFAY*TYLP-LTKR*TTPISVRC 225
           SVWMC+ ++ S   Y + LP L++    P+++ C
Sbjct: 19  SVWMCYAKQNSASHYTSTLPALSRAHALPLALLC 52


>Z74028-9|CAC42259.1|  162|Caenorhabditis elegans Hypothetical
           protein C14C10.6 protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 323 SVWMCFEQRRSIFAY*TYLP-LTKR*TTPISVRC 225
           SVWMC+ ++ S   Y + LP L++    P+++ C
Sbjct: 19  SVWMCYAKQNSASHYTSTLPALSRAHALPLALLC 52


>Z11126-7|CAO82061.1|  522|Caenorhabditis elegans Hypothetical
           protein ZK643.3b protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 179 GLC*YFIMLLVKHYLTELVTS 117
           G C YFI +LV+HY    V S
Sbjct: 38  GACFYFIFMLVEHYKDRYVAS 58


>Z11126-6|CAA77471.2|  480|Caenorhabditis elegans Hypothetical
           protein ZK643.3a protein.
          Length = 480

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 179 GLC*YFIMLLVKHYLTELVTS 117
           G C YFI +LV+HY    V S
Sbjct: 38  GACFYFIFMLVEHYKDRYVAS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,571,420
Number of Sequences: 27780
Number of extensions: 258933
Number of successful extensions: 844
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)