Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11c01r
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 29 0.72
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 2.2
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 3.8
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 26 5.0
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 5.0
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 25 8.8
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 25 8.8
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 25 8.8
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 8.8
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 29.1 bits (62), Expect = 0.72
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Frame = +2
Query: 200 NGAIQREAKRLIVKNKR-------FERSQVLAFVVEWIDENKELEWESTFSTSRQHESFR 358
+ ++ + + +V NKR F + + ++ V+++DE+ L + Q R
Sbjct: 218 SASVSKSENKALVNNKRYSDSYFYFSKMRRISIDVDYVDEDLNL----INAYLSQFGKKR 273
Query: 359 HVTELFRHIKRYFSFVEHLHNFSHWHGVFFKYDKFIRI--ADNLVLTSGEFS 508
+ EL + R FS + H FS W +F + FI D +L+ E S
Sbjct: 274 SLNELCALLSRRFS---NRHTFSEWRALFMHFFPFINSEGVDPAILSDRETS 322
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Frame = -1
Query: 751 IDASNSVYFSKEEIKNNHVHDVKVRQPRLNHS-----------PFNVNIEVDSNVASDAV 605
ID S+ ++ +N + PRLNHS P + NI D + + D +
Sbjct: 265 IDVSDEDLHPSSQLNDNEASSLFPDTPRLNHSLSFVSLVSSLPPLDQNIMQDYHTSKDIL 324
Query: 604 VKIFLAPKY-DDNGIPLTLEDN 542
IFL + D + + L D+
Sbjct: 325 TSIFLDVNFADSSALEAKLSDS 346
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.6 bits (56), Expect = 3.8
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 126 GNRSPSW*MKISLKYMLG-TLNNASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKT 302
GN PS+ K S Y G NN+ G PR SR + +SNG +
Sbjct: 308 GNSHPSY-NKYS-HYQHGFNYNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRSAN 365
Query: 303 KSWNGNPPSVPLGS 344
+S NP +V GS
Sbjct: 366 QSPRNNPQNVNNGS 379
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = -1
Query: 604 VKIFLAPKYDDNGIPLTLEDNWMKFF----ELDWFTTKLTAGQNKI 479
++IFL P +G+ +D W+ F+ E DW G N +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/70 (28%), Positives = 27/70 (38%)
Frame = +3
Query: 189 NASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKTKSWNGNPPSVPLGSMSLLGM*Q 368
+A TTG S GKP G + T KG + G + K + P S
Sbjct: 264 SAPTTGFSFGKPAGQAASTATDKGTTTTSSAGTGFSFGKPATTEDTNKPTAPNSAFTKPA 323
Query: 369 NSSDISKGTF 398
S+ +K TF
Sbjct: 324 TSTGDNKPTF 333
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 658 SPFNVNIEVDSNVASDAVVKIFLAPKYDDNGIP 560
S F V++ VD +VAS + AP DN P
Sbjct: 113 SAFTVSVPVDVDVASHVNISSPSAPSLSDNLFP 145
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 467 RIADNLVLTSGEFSCEPV 520
RI D LV+T+G+ S EP+
Sbjct: 59 RIEDTLVVTAGQTSSEPI 76
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 14 FLHFLWILRMQNSSVYLNLI-FWNNIRLCVIRRNIEFVREPFTL 142
FL W+ Q + +LI WN I CV+ IE VR T+
Sbjct: 91 FLKSSWLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVRSIATI 134
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 560 RYSVVIVFGSQEDFDNSVTGDIRINLNVNVE 652
R ++V+V G + FD +T + ++N N++
Sbjct: 375 RSAIVLVRGLLDHFDQKITSVVSTHINANLQ 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,671
Number of Sequences: 5004
Number of extensions: 69448
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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