Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b23r
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709 86 2e-17
12_01_0047 + 410349-410459,411289-411489,412251-412454 70 1e-12
11_01_0045 + 346817-347168,347582-347713,347790-347968,348654-34... 70 1e-12
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 28 5.5
10_08_0238 - 16093780-16094355 27 7.3
04_04_1318 + 32608441-32608833,32608953-32608997,32609092-326091... 27 7.3
02_03_0373 + 18281644-18281856 27 7.3
01_01_1125 - 8920590-8924372 27 9.7
>06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709
Length = 115
Score = 85.8 bits (203), Expect = 2e-17
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Frame = -1
Query: 437 MPHFRIETNIS-RSKIPADFVVKAIPVLAKALGKPEQYCVVTVIPEMLMSFGGSTEPCAI 261
MP + TN+ + + AD + LA+ +GKPE Y +V++ + MSF S EP A
Sbjct: 1 MPQLSLTTNVPVDAVVAADIIKDCSKALARIIGKPESYVMVSISGSVPMSFAASEEPAAY 60
Query: 260 ANLMSIGSLGVEQNKKHAKVLFELVEKELGVPTDRMYITFQDEPTGNVGFKGTTF 96
LMSIG +G N K + L E++E +L V R Y+ F D N+GF G+TF
Sbjct: 61 GELMSIGGIGPGVNGKLSAALAEILETKLSVSRSRFYVKFDDVKGFNLGFNGSTF 115
>12_01_0047 + 410349-410459,411289-411489,412251-412454
Length = 171
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = -1
Query: 437 MPHFRIETNISRSKIPADFVVK-AIPVLAKALGKPEQYCVVTVIPEMLMSFGGSTEPCAI 261
MP + TN++ + V+ A +A +GKPE Y +V + + M+FGG+ EP A
Sbjct: 1 MPCLNVSTNVNLDGVDTSAVLADASKTVATIIGKPEAYVMVVLKGSVPMAFGGTQEPAAY 60
Query: 260 ANLMSIGSLGVEQNKKHAKVLFELVEKELGVPTDRMYITFQD 135
L+SIG L + NKK + + ++E +L +P R Y+ F D
Sbjct: 61 GELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYD 102
>11_01_0045 +
346817-347168,347582-347713,347790-347968,348654-348789,
348974-349070,349206-349306,349618-349781,349867-349938,
350034-350150,350235-350369,350421-350532,351197-351513,
353065-353265,353467-353544
Length = 730
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = -1
Query: 437 MPHFRIETNISRSKIPADFVVK-AIPVLAKALGKPEQYCVVTVIPEMLMSFGGSTEPCAI 261
MP + TN++ + V+ A +A +GKPE Y +V + + M+FGG+ EP A
Sbjct: 602 MPCLNVSTNVNLDGVDTSAVLADASKTVATIIGKPEAYVMVVLKGSVPMAFGGTQEPAAY 661
Query: 260 ANLMSIGSLGVEQNKKHAKVLFELVEKELGVPTDRMYITFQD 135
L+SIG L + NKK + + ++E +L +P R Y+ F D
Sbjct: 662 GELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYD 703
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 356 AKALGKPEQYCVVTVIPEMLMSFGGSTEPCAIANLM 249
A+ +GK YC+ E ++F ST+P ++N M
Sbjct: 62 AQQMGKEFHYCIKDTDDEWNIAFNFSTDPTFLSNCM 97
>10_08_0238 - 16093780-16094355
Length = 191
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 240 TNGHQVGYGTGFSGSTETHQHFRNYCD 320
+NGH G GTG+ ST + ++ Y +
Sbjct: 132 SNGHGSGSGTGYGSSTANNYYYGPYAN 158
>04_04_1318 +
32608441-32608833,32608953-32608997,32609092-32609130,
32609382-32609552,32610042-32610194,32610362-32610397,
32611123-32611184,32611590-32611680,32611767-32611808,
32611904-32612012,32612161-32612275,32612354-32612403,
32612577-32612655,32612763-32612813,32612966-32613107,
32613315-32613359,32613634-32613741,32613843-32613884,
32614388-32614570,32614932-32615135
Length = 719
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 206 KVLFELVEKELGVPTDRMYITFQDEP 129
+V F ++E ELG+P D ++ EP
Sbjct: 183 EVAFNIIETELGLPLDMIFSEISPEP 208
>02_03_0373 + 18281644-18281856
Length = 70
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 59 ILFFIMFIQRSRGKSFL*IQRCR*VRLGRLCTCG--LLVHPALF 184
++ I+FI S G F R R V G +CT G +LVH F
Sbjct: 9 VVAVILFILLSPGLLFQVPARTRVVEFGNMCTSGVSVLVHAVFF 52
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 268 QGSVDPPKLINISGITVTTQYCSGLPRALANTG 366
QG++D KL+ + TVT++ C L + L G
Sbjct: 771 QGALDVYKLLRMKSFTVTSKTCYRLLKCLLRNG 803
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,560
Number of Sequences: 37544
Number of extensions: 312007
Number of successful extensions: 825
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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