Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b23r
(542 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 30 0.018
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.16
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 1.5
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 4.6
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 4.6
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 4.6
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 22 4.6
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 21 8.1
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 21 8.1
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 21 8.1
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 21 8.1
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 21 8.1
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 21 8.1
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 21 8.1
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 21 8.1
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 8.1
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 8.1
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 29.9 bits (64), Expect = 0.018
Identities = 11/29 (37%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +2
Query: 431 EALYNFRLLLCFKREDVD-LFRRNAKFTI 514
EAL+NF ++ F R+D++ + RRN+++ +
Sbjct: 97 EALWNFPMISVFSRQDIETIIRRNSRYPL 125
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 26.6 bits (56), Expect = 0.16
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 210 MLLVLLHTQRTNGHQVGYGTGFSGSTETHQH 302
ML + H Q T+ + YG FSG E H
Sbjct: 416 MLTDVFHVQETDKYDAYYGNRFSGEYEIPAH 446
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 23.4 bits (48), Expect = 1.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 483 STSSRLKHNNNLKLYNASL*NRNQHFKIKNPS*FCGKSYTGV 358
S S++ HNNN YN + N N + N + C K Y +
Sbjct: 317 SLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNI 358
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 4.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 82 DKHYKKQYPNHRINSEK*CASIIIY 8
+ +YKK Y N+ IN E+ + +Y
Sbjct: 110 NNNYKKLYKNYIINIEQIPVPVPVY 134
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 4.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 82 DKHYKKQYPNHRINSEK*CASIIIY 8
+ +YKK Y N+ IN E+ + +Y
Sbjct: 110 NNNYKKLYKNYIINIEQIPVPVPVY 134
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 4.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 172 PSSFSTNSKRTLACFLFCSTPREPMDIRLAMAQGS 276
PS+ + NSK+ L LF ++ DI L + + S
Sbjct: 679 PSTLTKNSKQGLFSKLFAKKVKKDKDIILNVPKES 713
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 21.8 bits (44), Expect = 4.6
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +1
Query: 262 MAQGSVDPPKLINISGI 312
++ GSV+ P+L+ +SGI
Sbjct: 319 LSAGSVNTPQLLMLSGI 335
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 489 NKSTSSRLKHNNNLKLYN 436
N S S+ +NNN YN
Sbjct: 85 NNSLSNNYNYNNNYNNYN 102
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 489 NKSTSSRLKHNNNLKLYN 436
N S S+ +NNN YN
Sbjct: 85 NNSLSNNYNYNNNYNNYN 102
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 489 NKSTSSRLKHNNNLKLYN 436
N S S+ +NNN YN
Sbjct: 85 NNSLSNNYNYNNNYNNYN 102
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 489 NKSTSSRLKHNNNLKLYN 436
N S S+ +NNN YN
Sbjct: 85 NNSLSNNYNYNNNYNNYN 102
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 489 NKSTSSRLKHNNNLKLYN 436
N S S+ +NNN YN
Sbjct: 85 NNSLSNNYNYNNNYNNYN 102
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 489 NKSTSSRLKHNNNLKLYN 436
N S S+ +NNN YN
Sbjct: 85 NNSLSNNYNYNNNYNNYN 102
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 489 NKSTSSRLKHNNNLKLYN 436
N S S+ +NNN YN
Sbjct: 85 NNSLSNNYNYNNNYNNYN 102
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 489 NKSTSSRLKHNNNLKLYN 436
N S S+ +NNN YN
Sbjct: 85 NNSLSNNYNYNNNYNNYN 102
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 489 NKSTSSRLKHNNNLKLYN 436
N S S+ +NNN YN
Sbjct: 318 NNSLSNNYNYNNNYNNYN 335
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 8.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 489 NKSTSSRLKHNNNLKLYN 436
N S S+ +NNN YN
Sbjct: 318 NNSLSNNYNYNNNYNNYN 335
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,003
Number of Sequences: 438
Number of extensions: 3883
Number of successful extensions: 22
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -