Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b23f
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    29   0.63 
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    27   1.5  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.5  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   3.4  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.4  

>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 55  INRRLLV*NTTII*NYIMPHFRIETNISRSKIPADFVVKAIPVLAK 192
           +NR L    TT   N ++PH+  + ++   K+ ADFV     +LAK
Sbjct: 612 VNRTLKF--TTAKYNGLVPHYLTDPSVGAGKLKADFVKDVNALLAK 655


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 437 PLNPTLPVGSSWKVMYMRSVGTPSSFSTN 351
           P+NP  P  SS  +   R+  TP SFSTN
Sbjct: 324 PVNPITPNYSSIPLPAERNPKTPQSFSTN 352


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -1

Query: 535 IDYYGSTSFLAIYPMVWILFFIMFIQRSRG 446
           +D++    F AI  + W   FI+F+++++G
Sbjct: 88  VDFHAGYCFAAILSISWATGFILFLKKTQG 117


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 78  KHNNNLKLYNASL*NRNQHFKIK 146
           K +N ++LY+  L NRN+  KIK
Sbjct: 4   KQDNEVELYSIDLKNRNESAKIK 26


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 344 RTLACFLFCSTPREPMDIRLAMAQGSVD 261
           RT  CF +C+  +EP D+ L +   SVD
Sbjct: 90  RTTPCFSYCARLKEPKDL-LEIGSVSVD 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,917
Number of Sequences: 5004
Number of extensions: 54098
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)