Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b23f
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78012-2|CAB01412.1| 120|Caenorhabditis elegans Hypothetical pr... 93 2e-19
AL132860-2|CAB60512.1| 117|Caenorhabditis elegans Hypothetical ... 77 7e-15
Z71259-9|CAA95795.1| 146|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical ... 28 4.1
AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical ... 28 4.1
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 28 5.4
AF016432-5|AAB65378.1| 347|Caenorhabditis elegans Seven tm rece... 27 7.1
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 27 9.4
AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z78012-2|CAB01412.1| 120|Caenorhabditis elegans Hypothetical
protein C52E4.2 protein.
Length = 120
Score = 92.7 bits (220), Expect = 2e-19
Identities = 40/113 (35%), Positives = 65/113 (57%)
Frame = +1
Query: 106 MPHFRIETNISRSKIPADFVVKAIPVLAKALGKPEQYCVVTVIPEMLMSFGGSTEPCAIA 285
MP R+ TN+ K+P DF ++ +LA+++GKP + V + + G + +P +
Sbjct: 1 MPMVRVATNLPNEKVPVDFEIRLTDLLARSMGKPRERIAVEIAAGARLVHGATHDPVTVI 60
Query: 286 NLMSIGSLGVEQNKKHAKVLFELVEKELGVPTDRMYITFQDEPTGNVGFKGTT 444
++ SIG++ E N ++ + E KELG+P D++ ITF D P VGF GTT
Sbjct: 61 SIKSIGAVSAEDNIRNTAAITEFCGKELGLPKDKVVITFHDLPPATVGFNGTT 113
>AL132860-2|CAB60512.1| 117|Caenorhabditis elegans Hypothetical
protein Y56A3A.3 protein.
Length = 117
Score = 77.4 bits (182), Expect = 7e-15
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Frame = +1
Query: 106 MPHFRIETNISRSKIPADFVVKAIP-VLAKALGKPEQYCVVTVIPEMLMSFGGSTEPCAI 282
MP F I N+ + ++K + VL K L KPEQY + + + + G+TEP
Sbjct: 1 MPVFSINVNVKVPAEKQNEILKELSTVLGKLLNKPEQYMCIHFHEDQGILYAGTTEPAGF 60
Query: 283 ANLMSIGSLG-VEQNKKHAKVLFELVEKELGVPTDRMYITFQDEPTGNVGFKGTTF 447
A L SIG +G +QN + V+F ++EK LG+P +R+YI F + ++ + G TF
Sbjct: 61 AVLKSIGGVGSAKQNNAISAVVFPIIEKHLGIPGNRLYIEFVNLGAADIAYNGQTF 116
>Z71259-9|CAA95795.1| 146|Caenorhabditis elegans Hypothetical
protein F13G3.9 protein.
Length = 146
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/111 (25%), Positives = 54/111 (48%)
Frame = +1
Query: 106 MPHFRIETNISRSKIPADFVVKAIPVLAKALGKPEQYCVVTVIPEMLMSFGGSTEPCAIA 285
MP +++TN+ K+ F V+ +AK + +PE V++ M+ G T+P A+
Sbjct: 1 MPVIKVQTNVK--KVSDGFEVRLAIHMAKVMKRPESQIFVSLDMNSRMTRGQLTDPLAVL 58
Query: 286 NLMSIGSLGVEQNKKHAKVLFELVEKELGVPTDRMYITFQDEPTGNVGFKG 438
++ S L +++ L E +EL + +D + I ++ +GF G
Sbjct: 59 DVTSSTVLTPILTEEYTVALCEFFSQELALDSDAVLINYRSLSPELIGFNG 109
>AF016688-9|AAN65322.1| 816|Caenorhabditis elegans Hypothetical
protein F18A12.8b protein.
Length = 816
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 18 DIEKIVNFAFLLNKSTSSRLKHNNNLKLYN 107
DIEKI++F L K + + NN +LYN
Sbjct: 375 DIEKIIDFEIELAKIIVAEDERRNNTRLYN 404
>AF016688-8|AAB66079.2| 848|Caenorhabditis elegans Hypothetical
protein F18A12.8a protein.
Length = 848
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 18 DIEKIVNFAFLLNKSTSSRLKHNNNLKLYN 107
DIEKI++F L K + + NN +LYN
Sbjct: 375 DIEKIIDFEIELAKIIVAEDERRNNTRLYN 404
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 440 VPLNPTLPVGSSWKVMYMRSVGTPSSFSTNSKRTLAC 330
VP+NP+LPV S + + PS+F + R C
Sbjct: 620 VPMNPSLPVSSHSESQVRSTKKLPSNFKEDDIRHSTC 656
>AF016432-5|AAB65378.1| 347|Caenorhabditis elegans Seven tm
receptor protein 225 protein.
Length = 347
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 494 YGLDIVFYNVYPKIAWKVVPLNPTLPVGSSWKVMYMRSV 378
YG + ++++ W VV NP L + WK++ S+
Sbjct: 102 YGASMAVFSLHFIYRWLVVTENPLLETFNGWKIILWFSI 140
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +1
Query: 247 MSFGGSTEPCAIANLMSIGSLGVEQNKKHAKVLFELVEKELGVPTDRMYIT 399
+ F G +I N+ G + + NK + ++V+ VP+ ++IT
Sbjct: 169 IDFDGGDSVVSIKNVNENGKISISNNKFTKNTMHDIVKLLESVPSSEIFIT 219
>AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical
protein Y71H2AM.10 protein.
Length = 871
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 515 IISRYLSYGLDIVFYNVYPKIAWKVVPLNPTLPVGSSWKVMYMRSVGTPSSFS-TNSKRT 339
+ + YL Y F +PK+ K+ + TL +WKV + R + + + R
Sbjct: 368 VYAHYLRYTTTYSFRVWFPKLPLKIWMSSSTLSTIKNWKVGFWRDLPLGGGVKRSRAARQ 427
Query: 338 LAC 330
AC
Sbjct: 428 FAC 430
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,868
Number of Sequences: 27780
Number of extensions: 297404
Number of successful extensions: 790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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