Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b22r
(403 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30 pro... 195 5e-50
L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30 pro... 195 5e-50
BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30 p... 195 5e-50
BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30 p... 195 5e-50
AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30 p... 195 5e-50
X81625-1|CAA57281.1| 437|Homo sapiens C11 protein protein. 34 0.15
U90176-1|AAB49726.1| 437|Homo sapiens eukaryotic release factor... 34 0.15
BT007374-1|AAP36038.1| 404|Homo sapiens eukaryotic translation ... 34 0.15
BC088358-1|AAH88358.1| 437|Homo sapiens eukaryotic translation ... 34 0.15
BC014269-1|AAH14269.1| 404|Homo sapiens ETF1 protein protein. 34 0.15
AF095901-1|AAD43966.1| 437|Homo sapiens eRF1 protein. 34 0.15
BX322644-3|CAI18448.2| 258|Homo sapiens tripartite motif-contai... 30 3.3
BX322644-2|CAM25692.1| 229|Homo sapiens tripartite motif-contai... 30 3.3
BX005441-3|CAM26236.1| 229|Homo sapiens tripartite motif-contai... 30 3.3
BX005441-2|CAM26235.1| 258|Homo sapiens tripartite motif-contai... 30 3.3
BC060785-1|AAH60785.1| 258|Homo sapiens TRIM40 protein protein. 30 3.3
AL671859-9|CAM24935.1| 258|Homo sapiens tripartite motif-contai... 30 3.3
AL671859-8|CAI17585.1| 229|Homo sapiens tripartite motif-contai... 30 3.3
AL669914-9|CAI18185.2| 258|Homo sapiens tripartite motif-contai... 30 3.3
AL669914-8|CAM25505.1| 229|Homo sapiens tripartite motif-contai... 30 3.3
AF489517-1|AAM09503.1| 229|Homo sapiens TRIM40 protein. 30 3.3
AB202084-1|BAE78604.1| 229|Homo sapiens ring finger protein 40 ... 30 3.3
AB110940-1|BAD13706.1| 229|Homo sapiens TRIM40 protein protein. 30 3.3
AB110939-1|BAD13705.1| 229|Homo sapiens TRIM40 protein protein. 30 3.3
J04449-1|AAA35747.1| 502|Homo sapiens cytochrome P450 nifedipin... 29 7.7
>X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 195 bits (475), Expect = 5e-50
Identities = 92/105 (87%), Positives = 97/105 (92%)
Frame = -2
Query: 324 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 145
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 144 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 10
EYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
>L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 195 bits (475), Expect = 5e-50
Identities = 92/105 (87%), Positives = 97/105 (92%)
Frame = -2
Query: 324 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 145
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 144 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 10
EYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
>BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 195 bits (475), Expect = 5e-50
Identities = 92/105 (87%), Positives = 97/105 (92%)
Frame = -2
Query: 324 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 145
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 144 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 10
EYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
>BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 195 bits (475), Expect = 5e-50
Identities = 92/105 (87%), Positives = 97/105 (92%)
Frame = -2
Query: 324 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 145
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 144 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 10
EYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
>AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 195 bits (475), Expect = 5e-50
Identities = 92/105 (87%), Positives = 97/105 (92%)
Frame = -2
Query: 324 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 145
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 144 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 10
EYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDII 105
>X81625-1|CAA57281.1| 437|Homo sapiens C11 protein protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.15
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 255 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 157
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>U90176-1|AAB49726.1| 437|Homo sapiens eukaryotic release factor 1
protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.15
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 255 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 157
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>BT007374-1|AAP36038.1| 404|Homo sapiens eukaryotic translation
termination factor 1 protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.15
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 255 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 157
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 297
>BC088358-1|AAH88358.1| 437|Homo sapiens eukaryotic translation
termination factor 1 protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.15
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 255 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 157
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>BC014269-1|AAH14269.1| 404|Homo sapiens ETF1 protein protein.
Length = 404
Score = 34.3 bits (75), Expect = 0.15
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 255 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 157
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 297
>AF095901-1|AAD43966.1| 437|Homo sapiens eRF1 protein.
Length = 437
Score = 34.3 bits (75), Expect = 0.15
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 255 SGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 157
+GKYC G + TLK L G +++I+ +N +R
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYENLDIMR 330
>BX322644-3|CAI18448.2| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BX322644-2|CAM25692.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BX005441-3|CAM26236.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BX005441-2|CAM26235.1| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>BC060785-1|AAH60785.1| 258|Homo sapiens TRIM40 protein protein.
Length = 258
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL671859-9|CAM24935.1| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL671859-8|CAI17585.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL669914-9|CAI18185.2| 258|Homo sapiens tripartite
motif-containing 40 protein.
Length = 258
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AL669914-8|CAM25505.1| 229|Homo sapiens tripartite
motif-containing 40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AF489517-1|AAM09503.1| 229|Homo sapiens TRIM40 protein.
Length = 229
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AB202084-1|BAE78604.1| 229|Homo sapiens ring finger protein 40
protein.
Length = 229
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AB110940-1|BAD13706.1| 229|Homo sapiens TRIM40 protein protein.
Length = 229
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>AB110939-1|BAD13705.1| 229|Homo sapiens TRIM40 protein protein.
Length = 229
Score = 29.9 bits (64), Expect = 3.3
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 15 CPSHQGL*WRVCTLCSIFRMLFLIQCCSRCSGEHLS 122
CP+HQ RVC C R+L ++C S EH+S
Sbjct: 71 CPNHQK---RVCRFCEESRLLLCVECL--VSPEHMS 101
>J04449-1|AAA35747.1| 502|Homo sapiens cytochrome P450 nifedipine
oxidase protein.
Length = 502
Score = 28.7 bits (61), Expect = 7.7
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 152 DFLSGGAFLAMITSFALPCRRVFKVCLYPKQYFPDFITKARRELIDS 292
DFL FL++I F +P V +C++P++ +F+ K+ + + +S
Sbjct: 214 DFLDP-FFLSIIFPFLIPILEVLNICVFPRE-VTNFLRKSVKRMKES 258
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,123,398
Number of Sequences: 237096
Number of extensions: 1095073
Number of successful extensions: 2199
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2199
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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