Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b22r
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...   174   2e-44
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   0.18 
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    30   0.71 
Z81089-3|CAB03137.1|  275|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   5.0  
Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score =  174 bits (423), Expect = 2e-44
 Identities = 80/105 (76%), Positives = 92/105 (87%)
 Frame = -2

Query: 324 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 145
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PPLRKSEI
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEI 60

Query: 144 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 10
           EYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+TD GDSDII
Sbjct: 61  EYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDII 105


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = -2

Query: 267 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 172
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 351 GFISIYAPKMVAAKKQKKTIESINSRLALV 262
           GF +I  P  V AKK   ++E+IN+R  L+
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILI 167


>Z81089-3|CAB03137.1|  275|Caenorhabditis elegans Hypothetical
           protein F53H4.4 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = -2

Query: 345 ISIYAPKMVAAKKQKKTIESINSRLALVM------KSGKYCLGYKQTLKTLRQGKAKLVI 184
           +S   P M A K + + +   N RLA+ M      +SG Y     Q  ++LR       +
Sbjct: 171 LSKLTPSMFAEKARPRRVRERNGRLAVRMSRISWNRSGLYYNAIIQFFESLRG-----TV 225

Query: 183 IAKNAPPLRKSEIEYYALLAKTGVH 109
           I +   PL +  + Y  +L  T  H
Sbjct: 226 ITQGEQPLCEKSVTYQEMLKHTLAH 250


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 141 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 16
           +Y LLA  G+     + +ELGTA   YY +    +T  G  D
Sbjct: 252 FYCLLA--GLSREEKSELELGTAADYYYLIQGKTLTAEGRDD 291


>Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical
           protein F55B12.6 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 189 PALLCLVEEFSKFACILSNIFPISSP 266
           PAL    EEFSKF  +L  I+P   P
Sbjct: 290 PALNLDSEEFSKFVTLLYAIYPAIDP 315


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 294 WSFSVSLLQPFWERKC 341
           W +S+S L P W+++C
Sbjct: 140 WQYSLSFLAPKWDKQC 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,537,988
Number of Sequences: 27780
Number of extensions: 182530
Number of successful extensions: 443
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)