Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b22f
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)       175   2e-44
SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   3.1  
SB_47701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)                27   5.5  
SB_57753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)
          Length = 108

 Score =  175 bits (425), Expect = 2e-44
 Identities = 82/99 (82%), Positives = 90/99 (90%)
 Frame = +2

Query: 110 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTG 289
           +ESINSRLALVMKSGK+ LG K TLKTLRQGKAKLVIIA N P LRKSEIEYYA+LAKTG
Sbjct: 1   MESINSRLALVMKSGKFTLGLKSTLKTLRQGKAKLVIIANNTPQLRKSEIEYYAMLAKTG 60

Query: 290 VHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 406
           VHHY+GNNIELGTACGKY+RV  L+ITDPGDSDII ++P
Sbjct: 61  VHHYTGNNIELGTACGKYFRVSVLSITDPGDSDIIRSMP 99


>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1202

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 354 AHSPSQTLVTRTLSPLC 404
           AHSP+ TL+T TL+P C
Sbjct: 152 AHSPATTLITVTLTPNC 168


>SB_47701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 212 LVIIAKNAPPLRKSEIEYYALLAKTGVHH 298
           L++ A N PP + SE  Y+ALL     H+
Sbjct: 270 LILTAPNVPPQKGSENLYFALLTYRNPHY 298


>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
          Length = 576

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +2

Query: 299 YSGNNIEL--GTA-CGKYYRVCTLAITDPGDSD 388
           ++GN I+L  G A CGKYY +C  A ++ GD D
Sbjct: 101 HTGNPIQLPYGLAWCGKYYNMCDNA-SNSGDVD 132


>SB_57753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 242 LRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 394
           L + EIE    LA+  +     NN+E G      YR+  +A     D DI+
Sbjct: 302 LSEMEIEQMLELARPRLRRARVNNLETGEIEDVDYRISQIAWLSDSDGDIV 352


>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 48  GEDSLAFTLPKWLQQRNRKR 107
           G+DS+   L KW Q++ RKR
Sbjct: 152 GQDSMRERLEKWRQEKQRKR 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,500
Number of Sequences: 59808
Number of extensions: 258240
Number of successful extensions: 663
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)