Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b22f
         (454 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   2.9  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   3.8  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    22   8.8  

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 11/59 (18%), Positives = 27/59 (45%)
 Frame = +2

Query: 56  FISIYAPKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 232
           F S+Y  K      + K+++ +NS   +++++   C         +++     V++ KN
Sbjct: 401 FASVYIVKTSLKSLELKSLKRVNSGSIVILENSDLCFVEDIDWSEIKKSSDHEVMVQKN 459


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +2

Query: 56  FISIYAPKMVAAKKQKKTIESI 121
           FIS+YAP  ++ ++ ++ +E++
Sbjct: 87  FISVYAPPSLSPQEYERLLEAV 108


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 92  KKQKKTIESINSRLALVMK--SGKYCLGY 172
           +  K T+ES+ S+LAL +   +  Y LG+
Sbjct: 152 RDDKATLESMGSQLALALANLTANYQLGF 180


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,600
Number of Sequences: 2352
Number of extensions: 8008
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38694201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)