Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b22f
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...   177   3e-45
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   0.22 
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    30   0.91 
Z81089-3|CAB03137.1|  275|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   6.4  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score =  177 bits (431), Expect = 3e-45
 Identities = 81/109 (74%), Positives = 95/109 (87%)
 Frame = +2

Query: 80  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 259
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PPLRKSEI
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEI 60

Query: 260 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 406
           EYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+TD GDSDII ++P
Sbjct: 61  EYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDIILSVP 109


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +2

Query: 137 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 232
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 53  GFISIYAPKMVAAKKQKKTIESINSRLALV 142
           GF +I  P  V AKK   ++E+IN+R  L+
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILI 167


>Z81089-3|CAB03137.1|  275|Caenorhabditis elegans Hypothetical
           protein F53H4.4 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = +2

Query: 59  ISIYAPKMVAAKKQKKTIESINSRLALVM------KSGKYCLGYKQTLKTLRQGKAKLVI 220
           +S   P M A K + + +   N RLA+ M      +SG Y     Q  ++LR       +
Sbjct: 171 LSKLTPSMFAEKARPRRVRERNGRLAVRMSRISWNRSGLYYNAIIQFFESLRG-----TV 225

Query: 221 IAKNAPPLRKSEIEYYALLAKTGVH 295
           I +   PL +  + Y  +L  T  H
Sbjct: 226 ITQGEQPLCEKSVTYQEMLKHTLAH 250


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 263 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 388
           +Y LLA  G+     + +ELGTA   YY +    +T  G  D
Sbjct: 252 FYCLLA--GLSREEKSELELGTAADYYYLIQGKTLTAEGRDD 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,179,731
Number of Sequences: 27780
Number of extensions: 197848
Number of successful extensions: 483
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)