Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b19f
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.49 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.1  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   1.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.5  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   3.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 496  SIPARVELMPSVLTTKGGR-VRLECKASARPPPRIT 600
            S+PA++       TT     V L C A   PPP IT
Sbjct: 1304 SVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVIT 1339



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 544 GGRVRLECKASARPPPRIT 600
           G  V L+C AS  P P IT
Sbjct: 428 GNSVFLKCIASGNPTPEIT 446



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 496 SIPARVELMPSVLT-TKGGRVRLECKASARPPPRIT 600
           ++P R  L P+     +G    +ECKA   P P +T
Sbjct: 696 NVPPRWILEPTDKAFAQGSDAAVECKADGFPRPVVT 731


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = +2

Query: 158  STASEPT---WPGAPTALPPPS 214
            ST + PT   WP   T +PPP+
Sbjct: 1069 STTTRPTTTNWPTQGTTIPPPA 1090


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 477 GLQVWIQYSSPSGAYAVSVDYQGR 548
           GLQ+W+ Y        V + + GR
Sbjct: 248 GLQLWVDYGCSPKKLIVGIPFYGR 271


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 155 ASTASEPTWPGAPTALPPPSRRACSRWPPT 244
           AS A+ P     PT +P PS  A    PPT
Sbjct: 209 ASPAAAPRSVATPTGIPTPSTSAS---PPT 235


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 170 EPTWPGAPTALPPPSRRACSRWPPTPPP 253
           E T   + +++P PS        PTPPP
Sbjct: 122 ESTVSSSTSSIPSPSTTDDLSTNPTPPP 149


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 261 DLHGGGVGGQRLHARLEGGG 202
           D  GGG GG R   R +GGG
Sbjct: 89  DDSGGGRGGGRDGDRGDGGG 108


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 110 AQHNAARPRVFIAPSQRSLAPR 45
           A  N  RP  +++P   S APR
Sbjct: 103 AAANLLRPHPYLSPLFHSAAPR 124


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = +2

Query: 206 PPSRRACSRWPPTP--PP 253
           PP+   C+ +PP P  PP
Sbjct: 165 PPTGFLCNNYPPLPQVPP 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,930
Number of Sequences: 336
Number of extensions: 2004
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)