Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b19f
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    28   1.2  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    28   1.2  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.8  
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    26   3.7  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    26   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.7  
SPCC24B10.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   4.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.9  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   6.4  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   6.4  

>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = +1

Query: 211 FEARVQSLAADAATVQVRRVLRDRGRWLHEDAVVRLKLPPEDLECLGRFEVPLKNRRNYI 390
           FE  +  L +  +  +V  VLR RG+  ++ ++V ++     L C+G ++    NR N I
Sbjct: 27  FEGAINRLNSLQSNAKVLEVLRKRGKIPNDQSMVEMR---HWLRCIG-YQPSDLNRLNVI 82

Query: 391 VFAERRGRTAVALGPPLKRTGKLLKRIRAVYKSG-YSIPARVELMPS 528
             A  +G+     G     T  +L++I+   KSG  SIP  + +  S
Sbjct: 83  HVAGTKGK-----GSTCAFTSSILQQIQ---KSGERSIPKCIGMYTS 121


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 584 GRALALHSSRTLPPLVVNTDGISSTRAGILYPDL*TARILLSNFPVLFS 438
           G  L L S R L   + ++DG SS +  IL+P L     LLS +  +F+
Sbjct: 192 GFFLTLSSGRLLHLNLKDSDGNSSIQVRILFPGLHIPNCLLSLYNSIFA 240


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 460  LKRIRAVYKSGYSIPARVELMPSVLTTKGGRVRLECKASAR 582
            LK+I        +  A + LMP  ++  G  +R ECKA  +
Sbjct: 904  LKKINGAASIHAAQHALLSLMPIFISNSGNDIRTECKAGEK 944


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 176  TWPGAPTALPPPSRRACSRWPPTPPP 253
            T P AP A  PP  +  S+ PP P P
Sbjct: 1002 TSPAAPLARVPPVPKLSSKAPPVPLP 1027


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 167  SEPTWPGAPTALPPP-SRRACSRWPPTPPP 253
            S PT P  P ++PPP S       PP+ PP
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 158 STASEPTWPGAPTALPPPSRRACSRWPPTPP 250
           S+   P  P AP   PP +    S  PP PP
Sbjct: 169 SSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 146 RRAASTASEPTWPGAPTALPPPSRR 220
           R AA T+S  +   +PT++PPP +R
Sbjct: 232 RLAARTSSNSSGVSSPTSVPPPVQR 256


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 173 PTWPGAPTALPPPSRRACSRWPPTPPP 253
           PT   AP  +PPP+       PP PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 173 PTWPGAPTALPPPSRRACSRWPPTPPP 253
           P   G P   PPP        PP PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 382 NYIVFAERRGRTAVALGPPLKRTGKLLKRIRAVYKSGY 495
           N IV AERRGR  V + P  K    ++K +  + K GY
Sbjct: 12  NNIVNAERRGRRQVLIRPSSK---VIVKFLTVMQKHGY 46


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 382 NYIVFAERRGRTAVALGPPLKRTGKLLKRIRAVYKSGY 495
           N IV AERRGR  V + P  K    ++K +  + K GY
Sbjct: 12  NNIVNAERRGRRQVLIRPSSK---VIVKFLTVMQKHGY 46


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 158 STASEPTWPGAPTALPP---PSRRACSRWPPTPPP 253
           ST++ P  P  P++ PP   PS  A +  PP PPP
Sbjct: 226 STSAPPIPPSIPSSRPPERVPSLSAPAP-PPIPPP 259



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 188 APTALPPPSRRACSRWPPTPP 250
           AP  +PPPS    S  P +PP
Sbjct: 252 APPPIPPPSNGTVSSPPNSPP 272


>SPCC24B10.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 277 DRGRWLHEDAVVRLKLPPEDLECLGRFEVPLKNRR 381
           ++GRWLH DA  R+    EDLE +  + + L N +
Sbjct: 34  EQGRWLHLDA--RMNRNIEDLE-ISNYNLRLMNEQ 65


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 182 PGAPTALPPPSRRACSRWPPTPPP 253
           PG P   PPP        PP PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 430 GPPLKRTGKLLKRIRAVYKSGYSIPA-RVELMPSVLTTKGGRVRLECKASARPPPRI 597
           G P KR  ++L+++   +  G   P  R +L+  V       V LE +  A+PPPR+
Sbjct: 253 GWPDKRCFEILEKVEKAHPDGPMWPLHRAKLLSMVKKQDEAIVVLE-ELMAKPPPRL 308


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
 Frame = +2

Query: 137  RWLRRAASTASEPTWPGAPT--ALP---PPSRRACSRWPPTPPP 253
            RW+    S  S    P  P   ALP   PPS    S  PP  PP
Sbjct: 1867 RWVNDDGSDLSNQAAPPPPPPMALPKAGPPSAAPTSALPPAGPP 1910


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +1

Query: 340 ECLGRFEVPLKNRRNYIVFAERRGRTAVALGPPLKRTGKLLKRIRAVYKSGYSIPA 507
           E L   ++P+K RR     A RRGR A+     L+R G       A      SIPA
Sbjct: 92  EVLSLQKLPIKGRRP----AGRRGRPALNTSNSLERNGTRYVSAEAPISVKSSIPA 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,703
Number of Sequences: 5004
Number of extensions: 31236
Number of successful extensions: 138
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)