Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b19f
(602 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z77661-12|CAB01191.1| 381|Caenorhabditis elegans Hypothetical p... 30 1.1
Z77658-13|CAB01162.1| 381|Caenorhabditis elegans Hypothetical p... 30 1.1
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 1.5
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 29 1.9
AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical ... 29 1.9
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 2.6
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 29 2.6
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 2.6
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 2.6
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 29 2.6
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 2.6
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 3.4
U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 29 3.4
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 3.4
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 28 4.5
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr... 28 4.5
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 28 5.9
U37429-9|AAA79344.3| 796|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 27 7.8
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra... 27 7.8
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 27 7.8
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 191 PTALPPPSRRACSRWPPTPPPCR 259
PT PPP R C P PPPC+
Sbjct: 90 PTPGPPPPRNNCLPPPGPPPPCQ 112
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 191 PTALPPPSRRACSRWPPTPPPCR 259
PT PPP R C P PPPC+
Sbjct: 90 PTPGPPPPRNNCLPPPGPPPPCQ 112
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 191 PTALPPPSRRACSRWPPTPPPCR 259
PT PPP R C P PPPC+
Sbjct: 90 PTPGPPPPRNNCLPPPGPPPPCQ 112
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 173 PTWPGAPTALPPPSRRACSRWPPTPPP 253
P GAPT PPP + PP PPP
Sbjct: 530 PLSTGAPTPPPPPPVGMANGGPPPPPP 556
>Z77661-12|CAB01191.1| 381|Caenorhabditis elegans Hypothetical
protein F40G12.11 protein.
Length = 381
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 471 DPLEQLPGSLQRRAERDGRAAPPLREHDIVPSVLQ 367
+PLE PG Q ER+ R P R ++ PS LQ
Sbjct: 345 NPLEGSPGPAQNMTERNIRKRPNSRHDNVSPSKLQ 379
>Z77658-13|CAB01162.1| 381|Caenorhabditis elegans Hypothetical
protein F40G12.11 protein.
Length = 381
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 471 DPLEQLPGSLQRRAERDGRAAPPLREHDIVPSVLQ 367
+PLE PG Q ER+ R P R ++ PS LQ
Sbjct: 345 NPLEGSPGPAQNMTERNIRKRPNSRHDNVSPSKLQ 379
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 152 AASTASEPTWPGAPTALPPPSRRACSRWPPTPPP 253
+ S +S P+ P P PPPS PP PPP
Sbjct: 1329 STSRSSSPSPPPPPPPPPPPSDDLTPVPPPPPPP 1362
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Frame = +2
Query: 155 ASTASEPTWPGAPTALP------PPSRRACSRWPPTPPP 253
+S A+EP P APTA P PP R+A +PPP
Sbjct: 198 SSAAAEPLPPPAPTAQPAHHPPAPPIRQAAHAAESSPPP 236
>AF036692-6|AAB88328.1| 397|Caenorhabditis elegans Hypothetical
protein C44B12.5 protein.
Length = 397
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 155 ASTASEPTWPGAPTALPPPSRRACSRWPPTPPP 253
A+ A+ PTW GAPTA P+ A + PP P
Sbjct: 358 AAPAAPPTWGGAPTA--APTWGAANDAPPAATP 388
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 496 SIPARVEL-MPSVLTTKGGRVRLECKASARPPPRI 597
S P R L M V TT+G ++LECK A P P +
Sbjct: 5698 SQPPRFTLKMGDVRTTEGQPLKLECKVDASPLPEM 5732
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 487 SGYSIPARVELMPSVLTTKGGRVRLECKASARPPPRI 597
+G P VEL+ S T+ + L+CK P P+I
Sbjct: 3812 TGRGAPEFVELLRSCTVTEKQQAILKCKVKGEPRPKI 3848
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 496 SIPARVEL-MPSVLTTKGGRVRLECKASARPPPRI 597
S P R L M V TT+G ++LECK A P P +
Sbjct: 5058 SQPPRFTLKMGDVRTTEGQPLKLECKVDASPLPEM 5092
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 487 SGYSIPARVELMPSVLTTKGGRVRLECKASARPPPRI 597
+G P VEL+ S T+ + L+CK P P+I
Sbjct: 3172 TGRGAPEFVELLRSCTVTEKQQAILKCKVKGEPRPKI 3208
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 496 SIPARVEL-MPSVLTTKGGRVRLECKASARPPPRI 597
S P R L M V TT+G ++LECK A P P +
Sbjct: 5698 SQPPRFTLKMGDVRTTEGQPLKLECKVDASPLPEM 5732
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 487 SGYSIPARVELMPSVLTTKGGRVRLECKASARPPPRI 597
+G P VEL+ S T+ + L+CK P P+I
Sbjct: 3812 TGRGAPEFVELLRSCTVTEKQQAILKCKVKGEPRPKI 3848
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 496 SIPARVEL-MPSVLTTKGGRVRLECKASARPPPRI 597
S P R L M V TT+G ++LECK A P P +
Sbjct: 5698 SQPPRFTLKMGDVRTTEGQPLKLECKVDASPLPEM 5732
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 487 SGYSIPARVELMPSVLTTKGGRVRLECKASARPPPRI 597
+G P VEL+ S T+ + L+CK P P+I
Sbjct: 3812 TGRGAPEFVELLRSCTVTEKQQAILKCKVKGEPRPKI 3848
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 496 SIPARVEL-MPSVLTTKGGRVRLECKASARPPPRI 597
S P R L M V TT+G ++LECK A P P +
Sbjct: 5058 SQPPRFTLKMGDVRTTEGQPLKLECKVDASPLPEM 5092
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 487 SGYSIPARVELMPSVLTTKGGRVRLECKASARPPPRI 597
+G P VEL+ S T+ + L+CK P P+I
Sbjct: 3172 TGRGAPEFVELLRSCTVTEKQQAILKCKVKGEPRPKI 3208
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 496 SIPARVEL-MPSVLTTKGGRVRLECKASARPPPRI 597
S P R L M V TT+G ++LECK A P P +
Sbjct: 5698 SQPPRFTLKMGDVRTTEGQPLKLECKVDASPLPEM 5732
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 487 SGYSIPARVELMPSVLTTKGGRVRLECKASARPPPRI 597
+G P VEL+ S T+ + L+CK P P+I
Sbjct: 3812 TGRGAPEFVELLRSCTVTEKQQAILKCKVKGEPRPKI 3848
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 28.7 bits (61), Expect = 3.4
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Frame = -3
Query: 567 TLQSHPPALGSQH*RHKLHSGWNTVSRLVDRPDPLEQLPGSLQRRAERDGRAAPPLREHD 388
T+++ H ++ + NT++ L + E L++R + + + E +
Sbjct: 635 TIEARKSVETDDHLSEEVVAAKNTIASLQATNEERETEIKKLKQRMDEERASHTAQSEQE 694
Query: 387 IVPSVLQGHFESSQA-LEVLGRQLEADDGVLVQPAAAVSQHAADLHGGGVGGQRLH 223
+ L+ H+E +Q L+ Q+ ++ L +SQ A L GG+ Q+LH
Sbjct: 695 M--KQLEAHYERAQKMLQDNVEQMNVENRGLRDEIEKLSQQMAALPRGGLNEQQLH 748
>U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical
protein F31A3.5 protein.
Length = 711
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 185 GAPTALPPPSRRACSRWPPTPP 250
G+ A+PPP CS PP PP
Sbjct: 453 GSGVAIPPPPDLRCSPVPPRPP 474
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +2
Query: 182 PGAPTALPPPSRR-ACSRWPPTPPP 253
P AP PPP C+ PP PPP
Sbjct: 34 PAAPACAPPPPPMCGCAPPPPPPPP 58
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 173 PTWPGAPTALPPPSRRACSRWPPTPPPC 256
P P AP PPP C P P PC
Sbjct: 82 PYVPPAPLPPPPPPASPCCGPSPVPAPC 109
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
F52G2.2a protein.
Length = 1319
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 170 EPTWPGAPTA-LPPPSRRACSRWPPTPP 250
+P + GAP+ LPPPS ++ P PP
Sbjct: 1225 QPRYNGAPSGPLPPPSSQSSFNGAPAPP 1252
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
F52G2.2b protein.
Length = 1129
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 170 EPTWPGAPTA-LPPPSRRACSRWPPTPP 250
+P + GAP+ LPPPS ++ P PP
Sbjct: 1035 QPRYNGAPSGPLPPPSSQSSFNGAPAPP 1062
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 194 TALPPPSRRACSRWPPTPPPC 256
+ LPPP C PP PPPC
Sbjct: 240 SCLPPPPSPVC--MPPPPPPC 258
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 161 TASEPTWPGAPTALPPPSRRACSRWPPTPPPC 256
T P PGAP P + C P TPPPC
Sbjct: 117 TPGRPGAPGAPGHPGKPPQSPCE--PLTPPPC 146
>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
F21C10.7 protein.
Length = 2541
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 502 PARVELMPSVLTTKGGRVRLECKASARPPPRIT 600
P V+ M SV +G RL+C +P P IT
Sbjct: 1230 PRFVKQMQSVQVNEGETARLDCVVVGKPEPEIT 1262
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 264 ADLHGGGVGGQRLHAR-LEGGGSAVGAPGHVG 172
A +HGGG GG A L G GAPG+ G
Sbjct: 89 AAVHGGGGGGGNCEACCLPGPAGPAGAPGNPG 120
>U37429-9|AAA79344.3| 796|Caenorhabditis elegans Hypothetical
protein F09E5.5 protein.
Length = 796
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -3
Query: 495 VSRLVDRPDPLEQLPGSLQRRAER 424
V+ L+ RPD LE+LP L++RA+R
Sbjct: 13 VAALLQRPDQLEKLP-ELKKRADR 35
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 27.5 bits (58), Expect = 7.8
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Frame = +1
Query: 157 LYCERADVAWRAYRAPAAFEARVQSLAADAATVQVRRVLRDRGRWLH----EDAVVRLKL 324
L+ E+A+ Y A +A +L T+ ++ R+++ + V++ ++
Sbjct: 4192 LHIEKAEERHLIYECTAKNDAGADTLEFPVQTIVAPKISTSGNRYINGSEGTETVIKCEI 4251
Query: 325 PPEDLE-CLGRFEVPLKNRRNYIVFAERRGRTAVALGPPLKRTGKLL-----KRIRAVYK 486
E E + VPL N ++F+E + L L G+ K A K
Sbjct: 4252 ESESSEFSWSKNGVPLLPSNN-LIFSEDYKLIKI-LSTRLSDQGEYSCTAANKAGNATQK 4309
Query: 487 SGYSIPARVELMPSVLTT---KGGRVRLECKASARPPPRIT 600
+ ++ ++M T KG +V L C+AS P P IT
Sbjct: 4310 TNLNVGVAPKIMERPRTQVVHKGDQVTLWCEASGVPQPAIT 4350
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 27.5 bits (58), Expect = 7.8
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Frame = +1
Query: 157 LYCERADVAWRAYRAPAAFEARVQSLAADAATVQVRRVLRDRGRWLH----EDAVVRLKL 324
L+ E+A+ Y A +A +L T+ ++ R+++ + V++ ++
Sbjct: 4192 LHIEKAEERHLIYECTAKNDAGADTLEFPVQTIVAPKISTSGNRYINGSEGTETVIKCEI 4251
Query: 325 PPEDLE-CLGRFEVPLKNRRNYIVFAERRGRTAVALGPPLKRTGKLL-----KRIRAVYK 486
E E + VPL N ++F+E + L L G+ K A K
Sbjct: 4252 ESESSEFSWSKNGVPLLPSNN-LIFSEDYKLIKI-LSTRLSDQGEYSCTAANKAGNATQK 4309
Query: 487 SGYSIPARVELMPSVLTT---KGGRVRLECKASARPPPRIT 600
+ ++ ++M T KG +V L C+AS P P IT
Sbjct: 4310 TNLNVGVAPKIMERPRTQVVHKGDQVTLWCEASGVPQPAIT 4350
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 27.5 bits (58), Expect = 7.8
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Frame = +1
Query: 157 LYCERADVAWRAYRAPAAFEARVQSLAADAATVQVRRVLRDRGRWLH----EDAVVRLKL 324
L+ E+A+ Y A +A +L T+ ++ R+++ + V++ ++
Sbjct: 4192 LHIEKAEERHLIYECTAKNDAGADTLEFPVQTIVAPKISTSGNRYINGSEGTETVIKCEI 4251
Query: 325 PPEDLE-CLGRFEVPLKNRRNYIVFAERRGRTAVALGPPLKRTGKLL-----KRIRAVYK 486
E E + VPL N ++F+E + L L G+ K A K
Sbjct: 4252 ESESSEFSWSKNGVPLLPSNN-LIFSEDYKLIKI-LSTRLSDQGEYSCTAANKAGNATQK 4309
Query: 487 SGYSIPARVELMPSVLTT---KGGRVRLECKASARPPPRIT 600
+ ++ ++M T KG +V L C+AS P P IT
Sbjct: 4310 TNLNVGVAPKIMERPRTQVVHKGDQVTLWCEASGVPQPAIT 4350
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 27.5 bits (58), Expect = 7.8
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Frame = +1
Query: 157 LYCERADVAWRAYRAPAAFEARVQSLAADAATVQVRRVLRDRGRWLH----EDAVVRLKL 324
L+ E+A+ Y A +A +L T+ ++ R+++ + V++ ++
Sbjct: 4192 LHIEKAEERHLIYECTAKNDAGADTLEFPVQTIVAPKISTSGNRYINGSEGTETVIKCEI 4251
Query: 325 PPEDLE-CLGRFEVPLKNRRNYIVFAERRGRTAVALGPPLKRTGKLL-----KRIRAVYK 486
E E + VPL N ++F+E + L L G+ K A K
Sbjct: 4252 ESESSEFSWSKNGVPLLPSNN-LIFSEDYKLIKI-LSTRLSDQGEYSCTAANKAGNATQK 4309
Query: 487 SGYSIPARVELMPSVLTT---KGGRVRLECKASARPPPRIT 600
+ ++ ++M T KG +V L C+AS P P IT
Sbjct: 4310 TNLNVGVAPKIMERPRTQVVHKGDQVTLWCEASGVPQPAIT 4350
>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 12
protein.
Length = 1022
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 146 RRAASTASEPTWPGAPTALPPPSRRACSRWPP 241
+R++ +AS+P P +P PPP + C PP
Sbjct: 886 KRSSPSASDPPVPTSPLP-PPPKLQHCRSEPP 916
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 27.5 bits (58), Expect = 7.8
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Frame = +1
Query: 157 LYCERADVAWRAYRAPAAFEARVQSLAADAATVQVRRVLRDRGRWLH----EDAVVRLKL 324
L+ E+A+ Y A +A +L T+ ++ R+++ + V++ ++
Sbjct: 4192 LHIEKAEERHLIYECTAKNDAGADTLEFPVQTIVAPKISTSGNRYINGSEGTETVIKCEI 4251
Query: 325 PPEDLE-CLGRFEVPLKNRRNYIVFAERRGRTAVALGPPLKRTGKLL-----KRIRAVYK 486
E E + VPL N ++F+E + L L G+ K A K
Sbjct: 4252 ESESSEFSWSKNGVPLLPSNN-LIFSEDYKLIKI-LSTRLSDQGEYSCTAANKAGNATQK 4309
Query: 487 SGYSIPARVELMPSVLTT---KGGRVRLECKASARPPPRIT 600
+ ++ ++M T KG +V L C+AS P P IT
Sbjct: 4310 TNLNVGVAPKIMERPRTQVVHKGDQVTLWCEASGVPQPAIT 4350
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,776
Number of Sequences: 27780
Number of extensions: 212107
Number of successful extensions: 1449
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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