Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b18r
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    30   0.39 
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    29   0.52 
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   2.8  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    26   4.8  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    26   6.4  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    25   8.4  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 386 KTIRNILMPRSMSTAVLTAFPLDYGFTMNLLAMIFCKYGDITF 514
           K  RN+++  SM   +L+ FP+D GF      + +C Y  ITF
Sbjct: 178 KDPRNLMLVFSMLKKILSTFPID-GFEQQFFDITYC-YFPITF 218


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 148 FALDYEFTMKIAKYVFSVSDKLYFPYSLFHLGETLH*KFIIDIINFRFS 294
           FA  Y  T  I  Y+F +    ++ Y L  L + LH  FI+ + N  F+
Sbjct: 109 FAFVYWITTAIVGYLFKIVRAPFYIYVLLILSKRLHSIFILRLFNDGFN 157


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 455 YGFTMNLLAMI-FCKYGDITFFLFSFTLIYTLI 550
           + F + +LA+  +C +G   FFLF+  +IY L+
Sbjct: 321 FSFGIVVLAIFSYCNFGIKQFFLFAAVMIYDLL 353


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 421 VYCSTYCLPFRLRFHNELISYDFLQIW*YYLFSF 522
           +YC   CL  ++  H++++ YD      Y L  F
Sbjct: 182 IYCQNLCLLAKMFLHSKMLYYDVEPFLFYVLTEF 215


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 699 LIEYIYIKTSFSVVHLITVPLT 634
           + EY++  +S+S+V L+T+P T
Sbjct: 302 IFEYVFYLSSWSLVFLLTLPAT 323


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 297 YCYKWML*IKILDLFTRHDY 356
           Y   W+L +K L +FT++DY
Sbjct: 144 YFMSWLLILKQLGIFTKNDY 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,205
Number of Sequences: 5004
Number of extensions: 46926
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)