Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b18r
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm rece...    30   1.9  
Z81056-9|CAB02908.2|  292|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 205 protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 440 AFPLDYGFTMNLLAMIFCKYGDITFFLFSFTLIYTLIKNIYITI 571
           A P+ YG     +A++FC   DIT  +  F L+ +L  N   T+
Sbjct: 138 AIPIIYGLVWGSIAVVFCGPRDITDKVIEFDLLDSLDINFKNTV 181


>Z81056-9|CAB02908.2|  292|Caenorhabditis elegans Hypothetical
           protein F09F3.11 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +2

Query: 182 LNMCLAYRIN--FIFLIPCFTWGKHYT 256
           L  CL +R N  F+F    FTW K YT
Sbjct: 123 LYTCLGFRPNCGFVFYPATFTWDKEYT 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,156,649
Number of Sequences: 27780
Number of extensions: 258554
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)