Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b18r
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.2  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   6.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.8  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   9.0  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   9.0  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   9.0  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   9.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.0  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   9.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   9.0  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   9.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   9.0  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 152 AKAFYIGCSSKHL*ERFFFSVFHCVRN 72
           A+ FY    + H  ++   SV HC  N
Sbjct: 2   AREFYSEADASHCIQQILESVHHCHHN 28


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 101 YNNYNKKLYYNINY 114


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 344 YNNNYKKLYYNINY 357


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 94  YNNNYKPLYYNINY 107


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 94  YNNNYKPLYYNINY 107


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 94  YNNNYKPLYYNINY 107


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 94  YNNNYKPLYYNINY 107


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 100 YNNNCKKLYYNINY 113


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 105 YNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 105 YNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 105 YNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 105 YNNNCKKLYYNINY 118


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 327 YNNNYKPLYYNINY 340


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 327 YNNNYKPLYYNINY 340


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 327 YNNNYKPLYYNINY 340


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 306 YNSKRKSKIYNINY 265
           YN+  K   YNINY
Sbjct: 316 YNNNYKPLYYNINY 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,293
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)