Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b18f
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          29   0.73 
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   5.1  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   6.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.0  

>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 536 SSMTPGNRSTVGSPERYVYGGSVTP 610
           SS+ P  + TVGSP +Y Y   +TP
Sbjct: 221 SSLLPAIKDTVGSPLQYNYRTKITP 245


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 362 LNRSNSITFSGIKDLKNSWAFRSFLKKGKKGSQTQEKSKTNQANGDSSPILFR 520
           L+ ++   +   K++ + +   + +KK K  S TQ ++ +  A+  SSP + R
Sbjct: 324 LSTAHHSAYRPSKNIHSMFQHFNSMKKNKNNSPTQSENVSASASSGSSPTVSR 376


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 157 IGELSQTDMRYRFIGEIVNVY 95
           +GEL  TD RY F  + +  Y
Sbjct: 901 LGELGSTDQRYNFFNQKIQEY 921


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/84 (21%), Positives = 36/84 (42%)
 Frame = +2

Query: 215 NICEFSGVIMAATAGPRKTVSIYDYPEHLNPFHEEDNHNKIRFWTIGRKLNRSNSITFSG 394
           N C  +G + ++T  P +TV    +   ++          +R + + + L+      F+G
Sbjct: 14  NKCVNNGTMASSTNVPDRTVGSKSFASSVSKNDGRLMQQMLRAF-VNKALDDKAEGNFAG 72

Query: 395 IKDLKNSWAFRSFLKKGKKGSQTQ 466
            +DL+  +A +S  K      Q Q
Sbjct: 73  YEDLRRQFAAKSDTKDAPSSLQLQ 96


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +2

Query: 356 RKLNRSNSITFSGIKDLKNSWAFR---SFLKK-GKKGSQTQEKSKTNQA 490
           ++L    + +FS  + +K  W  R    F KK GK+ S+ +  SK NQA
Sbjct: 680 KQLELDMNQSFSEQESIKLRWENRIDQMFTKKFGKRASEWKSSSKLNQA 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,855
Number of Sequences: 5004
Number of extensions: 54887
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)