Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b18f
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617...    33   0.25 
07_01_0223 - 1642553-1643676,1643725-1644541                           29   4.0  
12_02_0044 - 12807372-12807555,12807782-12807840,12807943-128080...    28   7.0  
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249...    28   7.0  
05_02_0006 - 5541290-5541961                                           27   9.2  
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138...    27   9.2  

>01_06_0403 -
           29060712-29060732,29061260-29061334,29061596-29061762,
           29061841-29061996,29062412-29062535,29062949-29063047,
           29063155-29063254,29063331-29063380,29063461-29063562,
           29063709-29063786,29063865-29064131,29064225-29064321,
           29064446-29064746,29066714-29066805,29066890-29067005,
           29067445-29067519,29067846-29067911,29068206-29068262,
           29068381-29068430,29068518-29068688,29068969-29069060,
           29069124-29069281
          Length = 837

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +2

Query: 395 IKDLKNSWAFRSFLKKGKKGSQTQEKSKTNQANGDSSPILFRRAMHYSSMTPGNRSTVGS 574
           IK  K  W     +K+   G     +     ++ D   I +    H +S  PGN ST G+
Sbjct: 610 IKSDKGPWKDPDIIKRVLNGEANYGRKILAISSVDGKKICYINPRHLTSKLPGNTSTSGA 669

Query: 575 PER 583
           P R
Sbjct: 670 PPR 672


>07_01_0223 - 1642553-1643676,1643725-1644541
          Length = 646

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 139 FVITRQCDKSRNCGGNLSPFVYYVKQYL*IFWCNYGSHSGSSQNG 273
           FV    CD   +CG  L+ F+   K +   FW  Y     +  NG
Sbjct: 82  FVFAILCDYPDSCGHGLAFFIAPSKNFASAFWTQYLGLFNNKNNG 126


>12_02_0044 -
           12807372-12807555,12807782-12807840,12807943-12808072,
           12808160-12808224,12808318-12808506,12808574-12809119,
           12809258-12809497,12809598-12810032
          Length = 615

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 263 RKTVSIYDYPEHLNPFH 313
           +K V IYDYP+ L PF+
Sbjct: 500 KKPVIIYDYPKQLKPFY 516


>04_04_0779 -
           28023735-28024058,28024520-28024618,28024704-28024940,
           28025227-28025334,28025427-28025486,28025813-28025888,
           28025984-28026144,28026374-28026436,28026543-28026630,
           28026872-28027612,28027695-28028239
          Length = 833

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +2

Query: 428 SFLKKGKKGSQ-TQEKSKTNQANGDSSPILF---RRAMHYSSMTPGNRSTVGSPERYVYG 595
           +F+  G+  S  + + S  N   GD    LF    R+    S  P  R T   P   V+ 
Sbjct: 275 TFVGSGQCSSPGSGQTSGHNSVGGDMLAQLFWQPSRSSPECSPIPSPRMTSPGPSSRVHS 334

Query: 596 GSVTPL-PRS 622
           GSV+PL PRS
Sbjct: 335 GSVSPLHPRS 344


>05_02_0006 - 5541290-5541961
          Length = 223

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 434 LKKGKKGSQTQEKSKTNQANGDS 502
           L++G+KG + +E+ K+ +ANG S
Sbjct: 176 LEEGRKGEKKKEERKSEKANGQS 198


>01_01_0161 -
           1385408-1385566,1385815-1385943,1386164-1386322,
           1387228-1387571,1387641-1387905,1387998-1388075,
           1388207-1388260,1389341-1389361,1389453-1389578,
           1389696-1389863,1389923-1390313,1390629-1390710,
           1391175-1391536,1391806-1392630,1392956-1393476
          Length = 1227

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 458 QTQEKSKTNQANGDSSPILFRRAMHYSSMTPGNRS 562
           QT E+S+  QA GD  P+L   A+H    T   RS
Sbjct: 324 QTDEQSRRPQAEGDEPPVLL-GALHDDPPTMRRRS 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,736,702
Number of Sequences: 37544
Number of extensions: 338345
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)