Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b18f
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16227| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_50010| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)                   28   7.1  

>SB_16227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 257 GPRKTVSIYDYPEH-----LNPFHEEDNHNKIRFWTIGRKLNRSNSITFSGIK 400
           GPRK     D PE      L    +EDNHN ++   + R+   SN++   GIK
Sbjct: 249 GPRKDTE-QDKPESASTGSLPHVPDEDNHNTVKLPPLKRESIESNTVISKGIK 300


>SB_50010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 257 GPRKTVSIYDYPEH-----LNPFHEEDNHNKIRFWTIGRKLNRSNSITFSGIK 400
           GPRK     D PE      L    +EDNHN ++   + R+   SN++   GIK
Sbjct: 412 GPRKDTE-QDKPESASTGSLPHVPDEDNHNTVKLPPLKRESIESNTVISKGIK 463


>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 359 KLNRSNSITFSGIKDLKNSWAFRSFLKKGKKGS---QTQEKSKTNQANGDSSP 508
           K+NRS S+  +    LK+    R  LKK ++ S   Q +E    NQ  G +SP
Sbjct: 173 KVNRSRSVLIASTNLLKSLKRKRLILKKDRRLSLVAQRRESLVENQLPGQTSP 225


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 353 GRKLNRSNSITFSGIKDLKNSWAFRSFLKKGKKGSQTQEK 472
           GR+ +RS S +  G +    SW++     K  KG  T  K
Sbjct: 717 GRRRSRSRSSSRKGKRQRSRSWSYDEDYSKSSKGKATAAK 756


>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 70  ISSIHNRE-NKH*LSLR*NDTA--YQFVITRQCDKSRNCGGNLSPFVYYV 210
           +S+ H+ E N +   LR   T   Y +  T  C KSR+CG  L  + +Y+
Sbjct: 437 VSNCHSSERNNYVFELRKYVTVNIYGYCGTYTCPKSRSCGEQLRRYKFYL 486


>SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)
          Length = 1153

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 455 SQTQEKSKTNQANGDSSPILFRRAMHYSSMTPGNRSTVGSPERYVYGGS--VTPLP 616
           +Q + KSK+ +    SSP +F+R++   S      S   SP   VY  S  +TP P
Sbjct: 404 NQNRGKSKSTRKKKTSSPFIFKRSL---STGDARCSANSSPAHSVYENSPVITPDP 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,583,348
Number of Sequences: 59808
Number of extensions: 398125
Number of successful extensions: 1061
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)