Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b18f
         (626 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF152318-1|AAD43712.1|  931|Homo sapiens protocadherin gamma A1 ...    31   2.5  
AF152322-1|AAD43716.1|  932|Homo sapiens protocadherin gamma A2 ...    31   4.4  

>AF152318-1|AAD43712.1|  931|Homo sapiens protocadherin gamma A1
            protein.
          Length = 931

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 24/110 (21%), Positives = 43/110 (39%)
 Frame = +2

Query: 242  MAATAGPRKTVSIYDYPEHLNPFHEEDNHNKIRFWTIGRKLNRSNSITFSGIKDLKNSWA 421
            ++ TA  RK+  I+  P + +    +++  K  F +  + L       FS        W 
Sbjct: 757  VSLTADSRKSHLIFPQPNYADTLISQESCEKKGFLSAPQSLLEDKKEPFSQQAPPNTDWR 816

Query: 422  FRSFLKKGKKGSQTQEKSKTNQANGDSSPILFRRAMHYSSMTPGNRSTVG 571
            F    + G  GSQ  + + T   N   + +L    +  +S      ST+G
Sbjct: 817  FSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLG 866


>AF152322-1|AAD43716.1|  932|Homo sapiens protocadherin gamma A2
            protein.
          Length = 932

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
 Frame = +2

Query: 242  MAATAGPRKTVSIYDYPEHLNPFHEEDNHNKIRFWTIGRKL-NRSNSITFSGIKDLKNSW 418
            ++ TA  RK+  I+  P + +    +++  K  F +  + L       TFS        W
Sbjct: 757  VSLTADSRKSHLIFPQPNYADTLISQESCEKKDFLSAPQSLLEEEREETFSQQAPPNTDW 816

Query: 419  AFRSFLKKGKKGSQTQEKSKTNQANGDSSPILFRRAMHYSSMTPGNRSTVG 571
             F    + G  GSQ  + + T   N   + +L    +  +S      ST+G
Sbjct: 817  RFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLG 867


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,457,077
Number of Sequences: 237096
Number of extensions: 1921067
Number of successful extensions: 3279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3279
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)